| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-04-28 | Added something to jsonable in trait.py to account for temp traits (this is ↵ | zsloan | |
| necessary for them to show up correctly when selecting traits from collections in pop-up windows, like when selecting cofactors for mapping) | |||
| 2021-04-28 | Merge pull request #567 from zsloan/bug/fix_gemma_temptrait_covariates | zsloan | |
| Account for temp traits when adding covariates with GEMMA mapping | |||
| 2021-04-28 | Account for temp traits when adding covariates with GEMMA mapping | zsloan | |
| 2021-04-28 | wqflask: views: Delete stale comments | BonfaceKilz | |
| 2021-04-28 | wqflask: views: Apply pep-8 | BonfaceKilz | |
| 2021-04-28 | Use right block level comments | BonfaceKilz | |
| 2021-04-28 | Remove stale comments | BonfaceKilz | |
| 2021-04-28 | Remove local variables that are unused | BonfaceKilz | |
| 2021-04-28 | wqflask: views: Remove news import | BonfaceKilz | |
| This name clashes with "def news" which is defined later. | |||
| 2021-04-28 | wqflask: views.py: Clean up imports section | BonfaceKilz | |
| Remove unused imports and break up long imports into shorter lines. | |||
| 2021-04-28 | minor fixes for correlation | Alexander Kabui | |
| 2021-04-27 | Convert to array and transpose R/qtl scanone results when not using ↵ | zsloan | |
| cofactors. For some reason the rows/columns are inverted when converted to a python object when doing scanone with cofactors vs without cofactors | |||
| 2021-04-27 | Randomized cross object filename, since I think it throws an error if the ↵ | zsloan | |
| same file is being written to simultaneously (or being written to while it's being read) | |||
| 2021-04-27 | Stopped using the scanone function pointer when doing R/qtl mapping, since ↵ | zsloan | |
| the results are not converted into a Python object in a way that preserves marker names (which is important because pseudomarkers can be added) Instead the marker names are extracted from the scanone results using R immediately after they're generated, and then passed to process_rqtl_results | |||
| 2021-04-27 | templates: submit_trait.html: Add field for inputting trait name | BonfaceKilz | |
| 2021-04-26 | fix:remove debug statements and commented code | Alexander Kabui | |
| 2021-04-26 | test for probe-type sample and tissue | Alexander Kabui | |
| 2021-04-23 | debugging for fetching probe data | Alexander Kabui | |
| 2021-04-23 | Remove stale comments | BonfaceKilz | |
| 2021-04-23 | Apply PEP-8 | BonfaceKilz | |
| 2021-04-23 | Rewrite For Loop in a more Pythonic way | BonfaceKilz | |
| 2021-04-23 | Rename index_page_orig to index_page | BonfaceKilz | |
| 2021-04-23 | Add full link to genetic data collected as part of WebQTL project | BonfaceKilz | |
| 2021-04-23 | Move looped sql query into one statement in "get_species_groups" | BonfaceKilz | |
| It's in-efficient to have a sql query executed in a loop. As data grows, the query becomes slower. It's better to let sql handle such queries. | |||
| 2021-04-23 | Remove stale comments | BonfaceKilz | |
| 2021-04-22 | Account for situations where the trait symbol is null for ProbeSet traits; ↵ | zsloan | |
| previously it could throw an error | |||
| 2021-04-22 | Added JS that sets the 'add to collection' dropdown to default to the ↵ | zsloan | |
| collection the use set as their default collection | |||
| 2021-04-20 | refactor code for iterating mrna tissue data | Alexander Kabui | |
| 2021-04-19 | Specify only getting the first two items after splitting the trait/dataset ↵ | zsloan | |
| input string | |||
| 2021-04-19 | Removedu nused function from network_graph.py | zsloan | |
| 2021-04-19 | Removed commented out js file | zsloan | |
| 2021-04-19 | Fixed NIAAA link because apparently it was changed | zsloan | |
| 2021-04-19 | Removed unused code | zsloan | |
| 2021-04-19 | fix for correlation_demo template | Alexander Kabui | |
| 2021-04-17 | refactoring fetching of data | Alexander Kabui | |
| 2021-04-17 | use gn3 lib | Alexander Kabui | |
| 2021-04-16 | add demo template | Alexander Kabui | |
| 2021-04-15 | change api port | Alexander Kabui | |
| 2021-04-14 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2021-04-14 | Added JS that automatically selects the default collection if it's set | zsloan | |
| 2021-04-14 | Added option to set default collection to collections/view.html | zsloan | |
| 2021-04-13 | SQL notes - table layout | Pjotr Prins | |
| 2021-04-13 | SQL notes - table layout | Pjotr Prins | |
| 2021-04-13 | SQL notes | Pjotr Prins | |
| 2021-04-13 | SQL notes | Pjotr Prins | |
| 2021-04-09 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into acenteno | Arthur Centeno | |
| 2021-04-09 | link to webinars | Arthur Centeno | |
| 2021-04-09 | Changed connditional in show_trait.js to check categorical_attr_exists ↵ | zsloan | |
| instead of just checking if there are case attributes | |||
| 2021-04-09 | Replaced the conditional for whether to show 'Block samples by group' to ↵ | zsloan | |
| instead check categorical_attr_exists | |||
| 2021-04-09 | Store categorical_attr_exists as a string instead of boolean since ↵ | zsloan | |
| apparently the boolean doesn't get passed to the template properly | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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