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2024-01-05fetch gn_server_url from current configAlexander_Kabui
2024-01-02Fix path to error GIFs....genenetwork2 is now run from the top-level directory of the repo. So, we prepend gn2 to the error GIF path. * gn2/wqflask/views.py (handle_generic_exceptions): Prepend gn2 to error GIF path. Arun Isaac
2024-01-02Make Group Info button point to info.genenetwork.orgzsloan
2024-01-02Change the way the info button works so that it just submits a form instead o...zsloan
2024-01-02Install static directory recursively.Arun Isaac
2024-01-02Fix base directory name in manifest....Earlier, we renamed the base directory from wqflask to gn2. Do likewise in the manifest. Arun Isaac
2024-01-02Move default settings into gn2 module.Arun Isaac
2024-01-02Do not read version from separate file....There is not much use having a separate version file. Besides, not having a separate file saves us all the trouble of dealing with the path to that file. Arun Isaac
2024-01-02Consistently use GN_VERSION from app config....GN_VERSION is set in the configuration file and read into the app config dictionary. Use that instead of re-reading from the etc/VERSION file. * gn2/utility/tools.py (gn_version): Delete function. (GN_VERSION): Delete variable. * gn2/wqflask/metadata_edits.py (display_phenotype_metadata, display_probeset_metadata, show_history): Use GN_VERSION in app config. * gn2/wqflask/views.py: Do not import GN_VERSION from gn2.utility.tools. (handle_generic_exceptions, index_page.__render__, submit_trait_form): Use GN_VERSION in app config. Arun Isaac
2024-01-02merge changesAlexander_Kabui
2024-01-02add loading spinner for form submissionAlexander_Kabui
2024-01-02fix issue for chromium browsers:form submitting twiceAlexander_Kabui
2023-12-30setup.py: Use find_packages.Arun Isaac
2023-12-30Namespace mock paths under gn2.Arun Isaac
2023-12-29Correct path to etc/VERSION.Arun Isaac
2023-12-29Remove only up to -c in bin/genenetwork2....For example, in bin/genenetwork2 etc/default_settings.py -c -m pytest, remove only up to -c. Arun Isaac
2023-12-29Namespace all modules under gn2....We move all modules under a gn2 directory. This is important for "correct" packaging and deployment as a Guix service. Arun Isaac
2023-12-29use gn-serverl-url for gn3 apiAlexander_Kabui
2023-12-23use gn3 local urlAlexander_Kabui
2023-12-22Merge pull request #823 from genenetwork/feature/gn-llm-ui...Feature/gn llm UIAlexander Kabui
2023-12-22guix: Do not fix version of package.Arun Isaac
2023-12-22guix: Clear up imports.Arun Isaac
2023-12-21Add option to invert X and Y axes for scatterplotzsloan
2023-12-21ui code refactoringAlexander_Kabui
2023-12-20Add missing programmers + margins to credits pagezsloan
2023-12-20Add option to Show More/Less for trait page descriptions when the description...zsloan
2023-12-20code refactoringAlexander_Kabui
2023-12-20code formatting fixesAlexander_Kabui
2023-12-20init gnqna ui implementationAlexander_Kabui
2023-12-20add template handler for gngnaAlexander_Kabui
2023-12-20add gnqna search form for home pageAlexander_Kabui
2023-12-18Display empty collections...The count in the badge includes collections that are empty. This commit fixes the UI to display empty collections too. Frederick Muriuki Muriithi
2023-12-18Fix typo.Frederick Muriuki Muriithi
2023-12-15Increase width of Location selection for correlationszsloan
2023-12-15Make correlation and mapping CSS for trait page the samezsloan
2023-12-15Set min-width for show_trait page container div to prevent buttons from looki...zsloan
2023-12-15Update to more correct Xapian Search Queries linkzsloan
2023-12-13Update Global Search help linkzsloan
2023-12-07Move asterisk in mapping options to prevent overlapping with the Copy and Sha...zsloan
2023-12-07Fix bug when viewing individual chromosomes for non-mouse/rat specieszsloan
2023-12-07Make the font-size for block-quotes smaller compared to the default....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Fix typo....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Add link to GN1 for quick comparison....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Update how the title is constructed....* wqflask/wqflask/templates/metadata/dataset.html: In order of priority, display: title, label, altLabel. Otherwise, you can possibly have the GN Accession Id forming the title of this page. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-07Update datasets page with updated RDF json-ld result....* wqflask/wqflask/templates/metadata/dataset.html: Minor updates. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-12-05Send the GN3 API server URI as configured for GN2Frederick Muriuki Muriithi
2023-12-05Update URIs to the new GN-AUTH uris...The javascript was still using the GN3 URIs from when auth was done in GN3. This commit updates the code to the new URI paths. Frederick Muriuki Muriithi
2023-12-05Remove user-roles fetching statement...Remove the code fetching all the user roles, since they are not used. Frederick Muriuki Muriithi
2023-11-30Remove duplicate month field in Phenotypes page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-11-30Fix dataset page links in Phenotypes UI page....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi