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2020-04-21Merge pull request #1 from genenetwork/testingacenteno
Updating my testing branch
2020-04-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-21Merge pull request #378 from acenteno/patch-1zsloan
Tutorials link added
2020-04-21Create tutorials.htmlacenteno
Link to the actual power point presentation
2020-04-21Update views.pyacenteno
Add tutorials link under News
2020-04-21Merge pull request #2 from genenetwork/testingzsloan
Pulling changes from main branch
2020-04-21Update base.htmlacenteno
2020-04-20Remove ElasticPjotr Prins
2020-04-20Text search commentPjotr Prins
2020-04-20MariadbPjotr Prins
2020-04-17Added text for Range search to the search result pagezsloan
2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Fixed issue that caused submitted traits to not open properly when submitted ↵zsloan
to a group with case attributes + fixed a link to GN1
2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Changed and re-ordered tools on View Collection page in the same way as the ↵zsloan
search result and correlation pages
2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Many changes, including:zsloan
- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-16Made change that causes new traits to be at the top of a collection + ↵zsloan
prevents duplicates
2020-04-13Changed Locus to Marker in table and fixed an issue with trying to zoom in ↵zsloan
on a chromosome after downloading permutation results
2020-04-13Fixed issue that caused export for HET3-ITP traits to not work due to the ↵zsloan
backslash in one of the case attribute names + added a couple links for stats table items
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-04-04Changed Y axis on permutation histogram from Frequency to Countzsloan
2020-04-04Changed Y axis on permutation histogram from Frequency to Countzsloan
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Updated R/qtl description textzsloan
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Added Chart Studio back to trait page Plotly figures and switched the ↵zsloan
PNG/SVG download icons; also upgraded Plotly, though I'm sure we'll want to move that out of git later
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Indices on the trait page sample table are now static, to allow for ↵zsloan
selecting ranges of indices after sorting a column
2020-04-03Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-03Added option to select cofactors from collection for R/qtlzsloan
Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-04-03Fixed permutation histogram to show correct LRS/LOD measure on X axiszsloan
2020-04-02Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-02Fixed a dumb issue that broke the buttons on trait list pages like search ↵zsloan
results or correlation results
2020-04-01Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-01Forgot to rearrange search result page buttons in previous commit, plus ↵zsloan
fixed an issue where .csv was missing from some filenames
2020-04-01Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-01Adding export option to correlation pagezsloan
Added ability to control in code the export file name Reorganized View Collection options
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Fixed issue where GEMMA wasn't showing up for certain groupszsloan
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Temporary fix for issue with RData rqtl results having shifted postiionszsloan
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Added integration for using RData files with R/qtl, plus some other changes ↵zsloan
to how it decides which mapping methods to display on the trait page
2020-03-25Added fix for issue when creating collections (related to hmac import change)zsloan
2020-03-25Added fix for issue when creating collections (related to hmac import change)zsloan
2020-03-19Made a minor change just to help qtlreaper deal with genotype files with ↵zsloan
positions in bases instead of megabases
2020-03-19Fixed digits issue, though still need to figure out how to increase gap ↵zsloan
between y axis and title
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