| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-05-31 | Merge branch 'api' of github.com:zsloan/genenetwork2 into api | zsloan | |
| 2019-05-31 | Added option to get just trait names from traits query, and also fixed ↵ | zsloan | |
| sample_data query to avoid duplicates | |||
| 2019-05-31 | Minor changes | zsloan | |
| 2019-05-31 | Migrate to newer HTMLGen | Muriithi Frederick Muriuki | |
| * Migrate to HTMLGen that supports both Python2 and Python3. | |||
| 2019-05-29 | Merge branch 'api' of github.com:zsloan/genenetwork2 into api | zsloan | |
| 2019-05-29 | Added option to get traits from dataset to API | zsloan | |
| 2019-05-29 | Added info for fetching trait list | zsloan | |
| 2019-05-24 | Fixed issue where change to making sample table unchecked made all figures ↵ | zsloan | |
| not show up | |||
| 2019-05-24 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into api | zsloan | |
| 2019-05-24 | Merge branch 'api' of github.com:zsloan/genenetwork2 into api | zsloan | |
| 2019-05-24 | Added status to error messages | zsloan | |
| 2019-05-24 | Put API readme in correct place | zsloan | |
| 2019-05-24 | Return JSON error instead of html now | zsloan | |
| 2019-05-24 | Made a few changes to trait page: | zsloan | |
| - Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable | |||
| 2019-05-24 | Added currently api progress, which will henceforth be appropriately ↵ | zsloan | |
| committed in this branch | |||
| 2019-05-24 | Replaced qtlreaper Dataset object with python object | zsloan | |
| 2019-05-23 | Fixed issue where some descriptions caused an error | zsloan | |
| 2019-05-17 | Made check for trait IDs a bit more secure to hopefully avoid any errors ↵ | zsloan | |
| similar to the previous one with a missing unigene id | |||
| 2019-05-17 | Fixed issue that caused error for traits with no unigene id | zsloan | |
| 2019-05-14 | Added all of the third party links from GN1 | zsloan | |
| Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty) | |||
| 2019-05-08 | Fixed issue where descriptions sometimes had unicode characters appear strangely | zsloan | |
| 2019-05-07 | Added link to GeneBridge to trait page | zsloan | |
| 2019-05-07 | Fixed issue where, if the user searched for a location range in the SNP ↵ | zsloan | |
| Browser, it often wouldn't correctly identify when markers were on genes | |||
| 2019-05-06 | Removed horizontal scroll from twitter field on index page | zsloan | |
| 2019-05-06 | Added link to Affiliates section of index page | zsloan | |
| 2019-05-06 | Made some changes Rob asked for to index page; reorganized some items and ↵ | zsloan | |
| made news scrollable | |||
| 2019-05-06 | Removed some unused imports of htmlgen | zsloan | |
| Fixed a bug that sometimes occurred in search results Changed order of items on index page | |||
| 2019-04-26 | Issue where GEMMA LOCO mapping didn't work when samples were edited out ↵ | zsloan | |
| should be fixed now | |||
| 2019-04-26 | Fixed issue where changed smaple values didn't show up in haplotype analyst ↵ | zsloan | |
| results | |||
| 2019-04-18 | Fixed issue that caused removed strains to still appear in the haplotype ↵ | zsloan | |
| analyst track | |||
| 2019-04-12 | Fixed PDF links in reference to point to the PDFs in GN1 | zsloan | |
| 2019-04-12 | - Improved Interval Analyst table appearance in mapping results | zsloan | |
| - Made the text on the "Forgot Password" page more simple and less cluttered - Added line to index page about RANGE search function - Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length | |||
| 2019-04-10 | Removed option to upload file for submitting traits, since it doesn't ↵ | zsloan | |
| currently work | |||
| 2019-04-10 | Fixed issue that was causing submitted temp traits to not work | zsloan | |
| 2019-04-05 | Fixed issue that caused error for phenotype searches (kind of a quick fix ↵ | zsloan | |
| and I do a try/except for whether it can build the trait object; ideally I should correctly filter out datasets) | |||
| 2019-04-05 | Fixed issue where Max LRS column displayed the mean in global search results | zsloan | |
| 2019-04-04 | Fixed issue where dataset_menu_structure.json included some groups with no ↵ | zsloan | |
| visible datasets | |||
| 2019-04-03 | Fixed an issue that caused global phenotype search to often not work and ↵ | zsloan | |
| certain phenotype datasets to not show up in drop-downs | |||
| 2019-04-03 | Fixed issue where strains could be added twice in the SNP browser, causing ↵ | zsloan | |
| some wonky behavior | |||
| 2019-04-02 | Fixed issue where non-GEMMA mapping would throw an error because it would ↵ | zsloan | |
| still look for the results filename | |||
| 2019-03-29 | Fixed issue that caused PCA results to be different in GN2 than in GN1; one ↵ | zsloan | |
| result needed to be transposed | |||
| 2019-03-29 | Updated UCSC Verify link-out from hg19 to hg38 for humans | zsloan | |
| 2019-03-28 | Added link to GN2 document github wiki to index page | zsloan | |
| 2019-03-28 | Possibly fixed issue where PCA traits didn't calculate for certain sets of ↵ | zsloan | |
| traits | |||
| 2019-03-27 | Changed gen_select_dataset.py to be able to show multiple datasets under the ↵ | zsloan | |
| Phenotype type (for example the GI Tract Metabolome data) Fixed issue where full description was given for some unpublished traits Fixed code related to editing certain pages (like news) with CKEditor, but it still won't work until the CKEditor library is included in GUIX or something | |||
| 2019-03-25 | - Added SVG export to basic stats figures | zsloan | |
| - Fixed issues where some stats figures (mainly box and violin plots) didn't update correctly when sample values were changes - Fixed issue with some temp traits if user wasn't logged in - Fixed issue where traits couldn't be added to a collection from the correlation results page | |||
| 2019-03-19 | Added option to add PCA traits to collection from correlation matrix page | zsloan | |
| 2019-03-18 | - Added PCA traits to correlation matrix. You can't change their names yet ↵ | zsloan | |
| or add them to a collection from the corr matrix page, but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well, but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch - Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc - Fixed some appearance issue where the network graph options were too wide if a trait name was too long | |||
| 2019-03-13 | Zooming into chromosome or remapping with GEMMA is now very fast, since it ↵ | zsloan | |
| stores the output file Added option to search for terms in quotes, searching for all the contents within the quotes Added link to R/qtl documentation when user is in the R/qtl mapping tab | |||
| 2019-03-11 | Changed header style, because the jumbotrons previously used didn't look ↵ | zsloan | |
| that good. Now it's just a simple header element. | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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