Age | Commit message (Collapse) | Author | |
---|---|---|---|
2016-06-09 | Docs: add SVG graph | Pjotr Prins | |
2016-06-09 | Merge branch 'paper' of github.com:pjotrp/genenetwork2 into paper | Pjotr Prins | |
2016-06-09 | Docs: expanding on GN2 source install and moved IRC log to the bottom | Pjotr Prins | |
2016-06-08 | Merge pull request #4 from Brainiarc7/patch-4 | Pjotr Prins | |
Fix a typo | |||
2016-06-08 | Fix a typo | Dennis E. Mungai | |
Fixed: Before, substituted. | |||
2016-06-08 | JOSS: added orcid for Nick Furlotte | Pjotr Prins | |
2016-06-08 | Docs: updated installation recipe | Pjotr Prins | |
2016-06-08 | Docs: updated installation recipe | Pjotr Prins | |
2016-06-08 | Docs: updated installation recipe | Pjotr Prins | |
2016-06-08 | Docs: added installation recipe | Pjotr Prins | |
2016-06-07 | R/qtl pair scan now works again, though it takes a while (10-15 minutes). | zsloan | |
Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc) | |||
2016-06-03 | Made a bunch of changes to correlation and search result tables (mainly the ↵ | zsloan | |
former) and made all tables a little more compact by lessenning the padding | |||
2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ↵ | zsloan | |
of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. | |||
2016-06-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
2016-06-02 | Fixed some issues with global search result tables, including: | zsloan | |
- Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js | |||
2016-06-02 | Paper: addressing JOSS requirements for contribution, where to find | Pjotr Prins | |
documentation and testing materials https://github.com/openjournals/joss-reviews/issues/25 | |||
2016-06-02 | Paper: addressing https://github.com/openjournals/joss-reviews/issues/25 | Pjotr Prins | |
last par: "Python" is spelled with a capital 'P' | |||
2016-06-02 | Paper: addressing https://github.com/openjournals/joss-reviews/issues/25 | Pjotr Prins | |
2nd par: "can be found in ___ guix-bioinformatics", please insert 'the article', 'the package', 'the lab fridge labeled'.. whichever is aproppriate ;-) | |||
2016-06-02 | Paper: addressing https://github.com/openjournals/joss-reviews/issues/25 | Pjotr Prins | |
1st par: "experimental data" could be fleshed out in 2-3 words for the biologist reader (is it SNPs, microarray data, NGS, Y2H or manually counted individuals?) | |||
2016-06-01 | Changed global gene search to no longer use server-side processing | zsloan | |
2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan | |
2016-05-31 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins | |
2016-05-31 | Renamed TEXTDIR to GENERATED_TEXT_DIR | Pjotr Prins | |
2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins | |
2016-05-30 | Merge pull request #163 from DannyArends/master | Pjotr Prins | |
Fixing my affiliation | |||
2016-05-30 | Consistency in the orchid IDs | DannyArends | |
2016-05-30 | Removing paper.json (unneeded) | DannyArends | |
2016-05-30 | Fixing my affiliation | DannyArends | |
2016-05-30 | Merge pull request #162 from arfon/patch-1 | Pjotr Prins | |
Fixing paper metadata | |||
2016-05-29 | Fixing paper metadata | Arfon Smith | |
2016-05-29 | JOSS: add symlink | Pjotr Prins | |
2016-05-29 | Updated webserver link | Pjotr Prins | |
2016-05-29 | Citation | Pjotr Prins | |
2016-05-29 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins | |
2016-05-29 | docs: fix conflict | Pjotr Prins | |
2016-05-29 | Add zenodo doi | Pjotr Prins | |
2016-05-29 | JOSS: add MQM citation and fix typov2.0 | Pjotr Prins | |
2016-05-29 | Merge branch 'rebase' into staging | Pjotr Prins | |
2016-05-29 | Added JOSS paper | Pjotr Prins | |
2016-05-27 | Fixed issue where the Non-BXD (or whatever group/inbred set) table would ↵ | zsloan | |
show up when there should be no such samples Fixed Interquartile Range link in basic statistics table | |||
2016-05-27 | Improved appearance of p values below slider in correlation menu on trait ↵ | zsloan | |
page. The way I did it is really awful (a bunch of 's) but nothing else seemed to work, including putting a div or span with a fixed width between them | |||
2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
2016-05-26 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan | |
2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
2016-05-25 | Docs: database reverse engineering | Pjotr Prins | |
2016-05-25 | Docs: database reverse engineering | Pjotr Prins | |
2016-05-24 | Docs: phenotypes | Pjotr Prins | |
2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
2016-05-18 | Merge branch 'staging' of https://github.com/genenetwork/genenetwork2 | zsloan | |