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2015-03-20Trying to get kinship_old back in lmm1Pjotr Prins
2015-03-20Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-19Removing mapmethod mapmodel from the coffeescriptDannyArends
2015-03-19testing some moreDannyArends
2015-03-19Print initial start_varsDannyArends
2015-03-19Print wantedDannyArends
2015-03-19Print for testingDannyArends
2015-03-19Freaking comma ???DannyArends
2015-03-19Testing againDannyArends
2015-03-19Updating the coffee scriptDannyArends
2015-03-19Strungling with passing parametersDannyArends
2015-03-19This is getting more and more annoyingDannyArends
2015-03-19This front to back passing of parameters is just weirdDannyArends
2015-03-19Name method is already takenDannyArends
2015-03-19try last time, something is really weird between the front and the backendDannyArends
2015-03-19Test/DebugDannyArends
2015-03-19Adding the new options to views.pyDannyArends
2015-03-19Minor updates to the marker regression code for R/qtl, layout mostlyDannyArends
2015-03-19Receiving the chosen method and model in the python backend codeDannyArends
2015-03-19Adding the method and model option in the userinterfaceDannyArends
2015-03-19Adding the method and model parameters of R/qtl so that we can have the user ↵DannyArends
choose to use non-parametric QTL mapping, binary phenotypes, etc
2015-03-19Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloanPjotr Prins
2015-03-18Begun adding pair scan option, fixed bug if no closest markers foundzsloan
2015-03-18.cross files should not be in the repositoryzsloan
2015-03-18Fixed the borky genofilezsloan
2015-03-18Adding a fix to purge non-existing markers as covariates for the R/qtl analysiszsloan
2015-03-18Merge branch 'pylmm0002'Pjotr Prins
Conflicts: wqflask/wqflask/my_pylmm/pyLMM/lmm.py
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2 into zsloanPjotr Prins
2015-03-18Some more minor code/comment updates, making code a little shorterDannyArends
2015-03-18Cleaning up some of the code, updating output and adding/changing commentsDannyArends
2015-03-18Merge branch 'master' of https://github.com/zsloan/genenetwork2Pjotr Prins
2015-03-18Tagging 0.50-gn2-pre2Pjotr Prins
2015-03-18Add uses debugPjotr Prins
2015-03-18Aligned gn2 handlers with standalonePjotr Prins
2015-03-18Cleaned up gwas.py to use uses and moved Redis call back into lmm.pyPjotr Prins
2015-03-18Progress handlerPjotr Prins
2015-03-18Replace progress meterPjotr Prins
2015-03-18Warning to stderrPjotr Prins
2015-03-18Warning to stderrPjotr Prins
2015-03-18Introduce sugar for callbacksPjotr Prins
2015-03-18Added uses as syntax sugar for callbacksPjotr Prins
2015-03-18Introducing callbacksPjotr Prins
2015-03-18Add callback handlersPjotr Prins
2015-03-17Added r function for setting genotypes and generating the cross filezsloan
2015-03-17Moved print statement for non-humans only inside if statementzsloan
2015-03-17Merge branch 'master' of github.com:pjotrp/genenetwork2 into pjotr_testzsloan
2015-03-17Added permutations and cleaned code for rqtlzsloan
2015-03-17Merge branch 'master' of https://github.com/zsloan/genenetwork2 into pylmm0001Pjotr Prins
2015-03-17Converting an absolute path to a relative pathDannyArends
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