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2024-04-24Setup loggingFrederick Muriuki Muriithi
Add logging to genenetwork2
2024-04-23Don't fail startup due to missing config.Frederick Muriuki Muriithi
2024-04-23Separate the auth server's public key from app's private keyFrederick Muriuki Muriithi
* Use the app's private key to sign the initial assertions used for retrieving an authorisation token from the auth server. * Use auth server's public key to validate the authorisation tokens got from the auth server.
2024-04-23Generate assertions to be used to get the token from the auth serverFrederick Muriuki Muriithi
2024-04-23Client needs access to PRIVATE KEY, not PUBLIC KEY.Frederick Muriuki Muriithi
2024-04-23Use the JWT Bearer grant typeFrederick Muriuki Muriithi
2024-04-23SSL_KEY_PAIR_PUBLIC_KEY: New settingFrederick Muriuki Muriithi
Define a new setting named SSL_KEY_PAIR_PUBLIC_KEY to hold the path to the SSL key-pair's public key, used with the JWTs.
2024-04-22Change haplotype analyst color schemezsloan
2024-04-16Import missing symbol.Frederick Muriuki Muriithi
2024-04-11Merge pull request #838 from genenetwork/feature/refactor-gnqa-uiAlexander Kabui
Feature/refactor gnqa UI
2024-04-05Delete redundant UI codebase.Alexander_Kabui
2024-04-05Use bootstrap classes for ui.Alexander_Kabui
2024-04-05Refactor gnqa history endpoint.Alexander_Kabui
* require gn-auth
2024-04-05Add get history fetch url on gnqa homepage.Alexander_Kabui
2024-04-05Add gnqa history search page.Alexander_Kabui
2024-04-05Update UI for gnqa rating to use htmx.Alexander_Kabui
2024-04-05Update gnqa rating route.Alexander_Kabui
2024-04-03Add pubmed info and stylingAlexander_Kabui
2024-04-02Display a history page containing all the edits.Munyoki Kilyungi
* gn2/wqflask/edit.py (__fetch_dataset_git_history__): New function. (view_history): New end-point. * gn2/wqflask/templates/dataset.html: Use htmx to fetch history. * gn2/wqflask/templates/dataset_history.html: New history page. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-02Use the dataset id to fetch the authorisation roles.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-02Load the edit page on the same page using HTMX.Munyoki Kilyungi
* gn2/wqflask/templates/dataset.html: Delete target="_blank" for the edit links. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-02Properly chain all the git and write operations together.Munyoki Kilyungi
* gn2/wqflask/edit.py (save_dataset_metadata): Chain running the git commands and the write operation together. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-02Refactor __run_cmd into private function __run_cmd__.Munyoki Kilyungi
* gn2/wqflask/edit.py: Import Right. Delete curry. (save_dataset_metadata)[__run_cmd]: Move this... (__run_cmd__): ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-02Add a "View History" link.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-27Add some styling to gnqa answer page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Fix htmx swap.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Delete unused javascript in gnqa page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Add missing braces/brackets.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Enable auto-complete in form.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Clean up gnqa answer page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Delete unused template.Munyoki Kilyungi
* gn2/wqflask/templates/pubmed_modal.html: Delete. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Delete llm.css and it's references.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Require ouath2 for gnqa history search.Munyoki Kilyungi
* gn2/wqflask/views.py (gnqna_hist): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Add htmx indicator.Munyoki Kilyungi
Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-27Add some styling to AI search bar.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Move search box to below the header.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Wrap "search" block round entire div that nests the search box.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Format files.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Re-locate gnqa search box to gnqa.html.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Require log-in to use the gn-qa search system.Munyoki Kilyungi
* gn2/wqflask/views.py: Import require_oauth2. (gnqna): Add "require_oauth2" decorator. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Clean up base.html.Munyoki Kilyungi
* gn2/wqflask/templates/base.html: Replace TABS with white-space. Fix hanging html tags. Format file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Rework GN-QA landing page.Munyoki Kilyungi
Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-03-27Fix mark-up in gn-qa landing page.Munyoki Kilyungi
Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com>
2024-03-26Patch correct module to fix tests.Frederick Muriuki Muriithi
2024-03-26Revert "bug: gn2.wqflask.resource_manager has no `requests` defined"Frederick Muriuki Muriithi
This reverts commit dde660453fc402b020178db41d136334a1b91b89.
2024-03-26Revert "Update test function signatures and remove obsolete tests."Frederick Muriuki Muriithi
This reverts commit 77af7c016749998d62b769bdd24069f511925ef9.
2024-03-26Update test function signatures and remove obsolete tests.Frederick Muriuki Muriithi
2024-03-26bug: gn2.wqflask.resource_manager has no `requests` definedFrederick Muriuki Muriithi
gn2.wqflask.resource_manager module does not have a `requests` variable or function defined, leading to errors in the test.
2024-03-26Revert "Disable CaseAttributeId - because it needs an update to the database"Frederick Muriuki Muriithi
This reverts commit 4539ef0297bb4b8c2954f250697c237069a16d64. This commit was ignoring the historical context that led to the changes in the schema of the `CaseAttribute*` tables, and leads to errors when the database schema is updated.
2024-03-26Add missing docstrings to save/metadata_edit functions.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-27 03:24:08 +0000