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2020-11-18Changed default Low/High colors for the correlation scatterplot cofactorzsloan
coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18Added some jquery closing the "Add To Collection" colorbox window afterzsloan
its form is submitted
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if thezsloan
cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18Removed console.log and commented out statements fromzsloan
get_traits_from_collection.js
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.jszsloan
(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleListBonfaceKilz
Test sample list
2020-11-18use f strings in marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-18use f strings in marker_regression/plink_mappingAlexanderlacuna
2020-11-17use better function namesAlexanderlacuna
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-13Switched to using f-strings instead of the older method of stringzsloan
formatting
2020-11-13Switched to using boolean casting to check if various trait attributeszsloan
exist
2020-11-13- Added Show/Hide Columns options and included the trait_list.css filezsloan
which including styling for said options - Changed some column widths to avoid text wrapping
2020-11-13Added some css to trait_list.css restyling the "show/hide column"zsloan
buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain
2020-11-13Changed some if/else statements to just initializing the variables + thezsloan
if statement and fixed "lrs_location" to "location" for target genotypes
2020-11-13Added cdn imports for fontawesome to correlation page and changedzsloan
superscript i's to fontawesome icons for the glossary links in column headers
2020-11-13Replaced superscript i's for glossary links in search result tablezsloan
headers with fontawesome icons
2020-11-12Import fontawesome css/js and used its info character for glossary links on ↵zsloan
search results page
2020-11-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/corr_table_changes
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-12refactor codeAlexanderlacuna
2020-11-12add pep8 fixes in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12add test for parse gemma output in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12modify tests for marker regressionAlexanderlacuna
2020-11-11add tests for marker_regression/rqtl_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/run_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-11Added Bonface to the footerzsloan
2020-11-11Changed some column widths and removed the width for description so it can ↵zsloan
vary with page width
2020-11-11- Fixed an issue causing the phenotype abbreviation to not be displayed ↵zsloan
properly in correlation results - Set default description to N/A when there's no trait description for phenotype traits
2020-11-11Switched checking if a trait is confidential to checking if it has a pubmed ↵zsloan
ID for the purposes of showing pre-publication abbreviation/description
2020-11-11Merge pull request #477 from BonfaceKilz/feature/add-glossary-pageBonfaceKilz
Feature/add glossary page
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵BonfaceKilz
feature/add-glossary-page
2020-11-11Update image widthBonfaceKilz
2020-11-11Add basic markdown stylingBonfaceKilz
* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container.
2020-11-10Changed logic for creating temp trait SampleList to account for both traits ↵zsloan
encoded as bytes and traits encoded as strings, since temp traits created before and after the Python 3 switchover will have different encoding
2020-11-10* wqflask/wqflask/correlation/show_corr_results.py - Changed some of the ↵zsloan
parameters sent to the correlation table * wqflask/wqflask/templates_correlation_page.html - Fixed some column defs and removed unused table configuration code
2020-11-10Fixed issue where strain values in bytes needed to be decoded when loading a ↵zsloan
Temp trait
2020-11-10Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and ↵zsloan
using the wrong name was causing correlations to not work.
2020-11-10Added CSS file for all pages that include a table of traitszsloan
2020-11-10add tests for write input for browser in marker_regression/run_mapping.pyAlexanderlacuna
2020-11-10Add missing links and some markdown formatting(underline, bold)BonfaceKilz
* wqflask/wqflask/static/markdown/glossary.md: Update file.
2020-11-10add tests for export_mapping_results in marker_regression/run_mapping.pyAlexanderlacuna
2020-11-09correct typo and variable namingAlexanderlacuna
2020-11-09refactor test_run_gemma functionAlexanderlacuna
2020-11-09remove whitespace in marker_regressionAlexanderlacuna
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