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2017-06-02Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2017-06-02settings: GENENETWORK_FILESPjotr Prins
2017-06-02settings: do not enforce JS pathsPjotr Prins
2017-05-31Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2017-05-31Added various tool options to correlation results page and improved table app......Fixed minor logic issue in trait.py zsloan
2017-05-31JS_GUIX_PATH may not be therePjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-22Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2017-05-22Added submit trait to header menu and fixed some minor issues with Network Gr...zsloan
2017-05-22Merge pull request #254 from pjotrp/diet-merge...Merge from the diet branchzsloan
2017-05-21Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile Pjotr Prins
2017-05-16Fixed issue that caused mapping to not work for R/qtl...Updated dataset menu dropdown info Began adding option to download statistics figures as PNG zsloan
2017-04-25Fixed issue with correlation result trait links if target dataset is differen......Improved collection list and view table appearances Added question mark image for glossary entries in table headers Fixed issue where extra decimal place sometimes appeared in bar chart Y axis tick values zsloan
2017-04-17Added option to remove collections from collection list page...Improved appearance of search result and collection tables zsloan
2017-04-05Added images directory with various gifs, etczsloan
2017-04-05Merge branch 'testing' of github.com:genenetwork/genenetwork2 into developmentzsloan
2017-04-05Merge pull request #251 from lyan6/master...Add meta info (X axis, Y axis) for Correlation Scatterplotzsloan
2017-04-05- Temporary traits can be created, viewed, and added to collections...- Correct PCA trait data is created but can't be saved yet - Added inner margins by increasing xDomain and yDomain of probability plot on trait page - Increased X/Y-axis label font size - Turned "processes" to 0 on runserver.py for PROD setting, since it doesn't work with threading - Improved appearance of correlation page table - Added links to github to index page - Removed js_data from GEMMA/PLINK mapping results, since it isn't used for those - Removed "Tissue" from trait page for phenotype traits zsloan
2017-04-04Change scatterplot image buffer/innerLei Yan
2017-04-04align X and Y meta infoLei Yan
2017-03-30Change "Correlation Scatterplot" size, font, color, etc.Lei Yan
2017-03-16Merge branch 'testing' of github.com:genenetwork/genenetwork2Lei Yan
2017-03-16Merge /home/zas1024/geneLei Yan
2017-03-16Add meta info (X axis, Y axis) for Correlation ScatterplotLei Yan
2017-02-09Merge pull request #247 from zsloan/master...A couple minor commits zsloan
2017-02-09Fixed issue where I forgot to add GeneticType to the query_for_group query fo......Increased digits of some Basic Statistics values from 2 to 3 zsloan
2017-02-09Changed second column header to 'Value' when there's only one sample groupzsloan
2017-02-09Merge pull request #246 from zsloan/master...Added genetic_type to DatasetGroup object to differentiate between wh…zsloan
2017-02-09Added genetic_type to DatasetGroup object to differentiate between which grou......Minor changes/improvements for trait page Updated dataset_menu_structure.json zsloan
2017-02-08Merge pull request #245 from zsloan/master...Changed the way .fam files are written/read, which fixes the issue wi…zsloan
2017-02-08Changed the way .fam files are written/read, which fixes the issue with GEMMA...zsloan
2017-02-06Merge pull request #242 from zsloan/master...Mapping results figure now correctly says whether GEMMA was used as m…zsloan
2017-02-06Mapping results figure now correctly says whether GEMMA was used as mapping m...zsloan
2017-02-06Merge pull request #241 from zsloan/master...Removed reference to trait_submission since it isn't used yetzsloan
2017-02-06Merge branch 'development' of github.com:zsloan/genenetwork2zsloan
2017-02-06Commented out reference to trait_submission since it's not used yetzsloan
2017-02-06Merge pull request #240 from zsloan/master...Various changeszsloan
2017-02-06Merge branch 'master' of github.com:zsloan/genenetwork2zsloan
2017-02-06Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens zsloan
2017-02-02Merge /home/zas1024/geneLei Yan
2017-01-26Merge pull request #237 from zsloan/master...Various changes/fixeszsloan
2017-01-26Merge pull request #1 from genenetwork/testing...Various changes/fixeszsloan
2017-01-26GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results zsloan
2017-01-03Fixed appearance of samples tables in show_trait to look like all the other t......Disabled sorting for the first column (check box) of the samples tables zsloan
2016-12-15Merge pull request #234 from zsloan/master...Various changeszsloan
2016-12-15Changed table appearance...Updated dataset_menu_structure.json zsloan
2016-12-13Fixed a problem related to the last commit that caused a problem when loading...zsloan
2016-12-12Moved a bunch of functions out of the GeneralTrait class that didn't need to ......Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static) Removed some unused code from show_trait.py changed appearance of table headers some, though needs a little more work Updated dataset_menu_structure.json zsloan
2016-11-29Fixed loadings plot so it looks like the GN1 figurezsloan
2016-11-21Fixed correlation page so it correctly sorts by the scientific notation for s......Set default sort for correlation page to sample p Improved appearance of correlation matrix some by decreasing line height Added labels to each figure/table on the correlation page zsloan
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