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2018-04-16Remove statements that might be causing issues...* I can't swear on this, but it seems the presence of these statements was causing elasticsearch to act weird. Muriithi Frederick Muriuki
2018-04-16Merge remote-tracking branch 'pjotrp/testing' into testingMuriithi Frederick Muriuki
2018-04-16Update mappings for Elasticsearch 6.2. Update logger...* Update the indexes mappings to be compatible with the newer Elasticsearch 6.2.* series. Close the index before updating it, and reopen it after to help with the re-indexing of the data. * Update the error logger to include the exception that was thrown. Muriithi Frederick Muriuki
2018-04-16Docs on elasticsearch usePjotr Prins
2018-04-15Deactivate analysis of email_address field...* Prevent elasticsearch from analysing and tokenising the email_address field so as to avoid issue with getting back all email addresses with the same domain as the one being searched for. Muriithi Frederick Muriuki
2018-04-15Add tests for Forgot Password feature...* Add tests to ensure the "Forgot Password" feature works appropriately. Muriithi Frederick Muriuki
2018-04-15Use existing code. Delay after delete....* Use existing code to get the elasticsearch connection. This should prevent tests from failing in case the way connections to elasticsearch are made change. * Delay a while after deleting to allow elasticsearch to re-index the data, thus preventing subtle bugs in the test. Muriithi Frederick Muriuki
2018-04-15Fix issue with indentation...* Ensure the return is at the correct indentation level so that it is executed correctly. Muriithi Frederick Muriuki
2018-04-13Check email provided on forgot password...* Ensure that the user actually provides an email address when they try to use the forgot password feature. Muriithi Frederick Muriuki
2018-04-13Fix logging in tests...* Use the LOG_LEVEL provided by the application settings to enable easy control of logging when running tests. It helps avoid a lot of verbosity when running tests. Muriithi Frederick Muriuki
2018-04-13Use single entry-point for tests...* Remove the run-integration-tests.py, and use the test-website.py as the entry point for all tests. This simplifies running the tests for the site. Muriithi Frederick Muriuki
2018-04-13Merge remote-tracking branch 'pjotrp/testing' into testingMuriithi Frederick Muriuki
2018-04-12README and docsPjotr Prins
2018-04-11Merge remote-tracking branch 'pjotrp/testing' into testingMuriithi Frederick Muriuki
2018-04-09Merge pull request #313 from pjotrp/testing-rm-TableTools...Remove TableTools.jszsloan
2018-04-07Dear @zsloan,...This patch removes TableTools. I don't think we use it. I have compared the look and feel of below pages and I see no difference. If that is correct we can simply ditch it by merging this PR. Note that if we are using such functionality this package is considered obsolete by the authors. According to https://datatables.net/extensions/tabletools/: This extension has now been retired and has been replaced by the Buttons and Select extensions. The documentation is retained for legacy reference only. New projects should use Buttons and Select in preference to TableTools. Moving Tabletools CSS --- a/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css +++ b/wqflask/wqflask/static/packages/TableTools/media/css/TableTools.css @@ -319,3 +319,8 @@ div.DTTT_collection a.DTTT_button { line-height: 20px; } +.no-sort::after { display: none!important; } +.no-sort { pointer-events: none!important; + cursor: default!important; +} + wqflask/wqflask/templates/correlation_matrix.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/collections/list.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/search_error.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/corr_scatterplot.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> wqflask/wqflask/templates/pair_scan_results.html: <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" /> Pjotr Prins
2018-04-06Merge pull request #311 from pjotrp/testing-rm-ValidationPlugin...Testing rm validation pluginzsloan
2018-04-06Merge pull request #309 from pjotrp/testing-rm-bloat...Testing rm bloatzsloan
2018-04-06Removing use ValidationPlugin. See https://github.com/genenetwork/genenetwork...Pjotr Prins
2018-04-06See #308....Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. Pjotr Prins
2018-04-05Removed cytoscape - it is in GuixPjotr Prins
2018-04-05Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Muriithi Frederick Muriuki
2018-04-04Merge pull request #303 from pjotrp/testing...Minor edits and document on ESzsloan
2018-04-04Authentication: comments addedPjotr Prins
2018-04-04ES: docPjotr Prins
2018-04-04Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2018-04-04Switched to plotly probability plot...Removed a variety of scripts that weren't being used on the trait page zsloan
2018-04-03Merge pull request #302 from pjotrp/testing...@acenteno added data upload scripts into main repozsloan
2018-04-03@acenteno added data upload scripts into main repoPjotr Prins
2018-04-02Fixed link for staging serverzsloan
2018-04-02Fixed error that caused server to not start with new user codezsloan
2018-04-02Merge pull request #301 from pjotrp/testing-rm-bloat...Testing rm bloat (jqplot and ckeditor)zsloan
2018-04-02Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2018-04-02Just added link to staging branch to header barzsloan
2018-04-02Merge pull request #300 from pjotrp/testing...Testingzsloan
2018-04-02Version bump...Config files are store in https://github.com/genenetwork/gn-deploy-servers repo Pjotr Prins
2018-04-02Testing moved to PythonPjotr Prins
2018-04-02Testing moved to PythonPjotr Prins
2018-04-02Config files are store in https://github.com/genenetwork/gn-deploy-servers repoPjotr Prins
2018-04-02Remove filePjotr Prins
2018-04-02User manager no longer uses SQLPjotr Prins
2018-04-02js: rm ckeditor - need to replacePjotr Prins
2018-04-02js: removed jqplotPjotr Prins
2018-04-02user_session add outputPjotr Prins
2018-03-31Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te......* Fix conflicts Muriithi Frederick Muriuki
2018-03-30Collections: use logging instead of print (@zsloan)Pjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Fixes related to E-mail forgotten passwordPjotr Prins
2018-03-30Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
2018-03-30Testing: removed test assertion (oops)Pjotr Prins
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