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2019-06-04Changed the logic for deciding y axis digits to deal with situations where ↵zsloan
the range is less tan 0.4; not sure if more than this needs to be accounted for
2019-06-04Fixed issue with probability plot y axis digitszsloan
2019-06-04Merge branch 'api' of github.com:zsloan/genenetwork2 into testingzsloan
2019-06-04Added GeneMANIA linkzsloan
Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page
2019-05-31Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-31Added option to get just trait names from traits query, and also fixed ↵zsloan
sample_data query to avoid duplicates
2019-05-31Minor changeszsloan
2019-05-29Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-29Added option to get traits from dataset to APIzsloan
2019-05-29Added info for fetching trait listzsloan
2019-05-24Fixed issue where change to making sample table unchecked made all figures ↵zsloan
not show up
2019-05-24Merge branch 'testing' of github.com:genenetwork/genenetwork2 into apizsloan
2019-05-24Merge branch 'api' of github.com:zsloan/genenetwork2 into apizsloan
2019-05-24Added status to error messageszsloan
2019-05-24Put API readme in correct placezsloan
2019-05-24Return JSON error instead of html nowzsloan
2019-05-24Made a few changes to trait page:zsloan
- Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable
2019-05-24Added currently api progress, which will henceforth be appropriately ↵zsloan
committed in this branch
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-23Fixed issue where some descriptions caused an errorzsloan
2019-05-17Made check for trait IDs a bit more secure to hopefully avoid any errors ↵zsloan
similar to the previous one with a missing unigene id
2019-05-17Fixed issue that caused error for traits with no unigene idzsloan
2019-05-14Added all of the third party links from GN1zsloan
Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty)
2019-05-08Fixed issue where descriptions sometimes had unicode characters appear strangelyzsloan
2019-05-07Added link to GeneBridge to trait pagezsloan
2019-05-07Fixed issue where, if the user searched for a location range in the SNP ↵zsloan
Browser, it often wouldn't correctly identify when markers were on genes
2019-05-06Removed horizontal scroll from twitter field on index pagezsloan
2019-05-06Added link to Affiliates section of index pagezsloan
2019-05-06Made some changes Rob asked for to index page; reorganized some items and ↵zsloan
made news scrollable
2019-05-06Removed some unused imports of htmlgenzsloan
Fixed a bug that sometimes occurred in search results Changed order of items on index page
2019-04-26Issue where GEMMA LOCO mapping didn't work when samples were edited out ↵zsloan
should be fixed now
2019-04-26Fixed issue where changed smaple values didn't show up in haplotype analyst ↵zsloan
results
2019-04-18Fixed issue that caused removed strains to still appear in the haplotype ↵zsloan
analyst track
2019-04-12Fixed PDF links in reference to point to the PDFs in GN1zsloan
2019-04-12- Improved Interval Analyst table appearance in mapping resultszsloan
- Made the text on the "Forgot Password" page more simple and less cluttered - Added line to index page about RANGE search function - Fixed bar chart on trait page so that it sets the bottom margin depending upon the longest sample name length
2019-04-10Removed option to upload file for submitting traits, since it doesn't ↵zsloan
currently work
2019-04-10Fixed issue that was causing submitted temp traits to not workzsloan
2019-04-05Fixed issue that caused error for phenotype searches (kind of a quick fix ↵zsloan
and I do a try/except for whether it can build the trait object; ideally I should correctly filter out datasets)
2019-04-05Fixed issue where Max LRS column displayed the mean in global search resultszsloan
2019-04-04Fixed issue where dataset_menu_structure.json included some groups with no ↵zsloan
visible datasets
2019-04-03Fixed an issue that caused global phenotype search to often not work and ↵zsloan
certain phenotype datasets to not show up in drop-downs
2019-04-03Fixed issue where strains could be added twice in the SNP browser, causing ↵zsloan
some wonky behavior
2019-04-02Fixed issue where non-GEMMA mapping would throw an error because it would ↵zsloan
still look for the results filename
2019-03-29Fixed issue that caused PCA results to be different in GN2 than in GN1; one ↵zsloan
result needed to be transposed
2019-03-29Updated UCSC Verify link-out from hg19 to hg38 for humanszsloan
2019-03-28Added link to GN2 document github wiki to index pagezsloan
2019-03-28Possibly fixed issue where PCA traits didn't calculate for certain sets of ↵zsloan
traits
2019-03-27Changed gen_select_dataset.py to be able to show multiple datasets under the ↵zsloan
Phenotype type (for example the GI Tract Metabolome data) Fixed issue where full description was given for some unpublished traits Fixed code related to editing certain pages (like news) with CKEditor, but it still won't work until the CKEditor library is included in GUIX or something
2019-03-25- Added SVG export to basic stats figureszsloan
- Fixed issues where some stats figures (mainly box and violin plots) didn't update correctly when sample values were changes - Fixed issue with some temp traits if user wasn't logged in - Fixed issue where traits couldn't be added to a collection from the correlation results page
2019-03-19Added option to add PCA traits to collection from correlation matrix pagezsloan
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