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2020-06-29Change that hopefully fixes some encoding stuffzsloan
2020-06-26Removed collections with zero members from list and count of user collectionszsloan
2020-06-26Changed buttons to inputs on trait page to fix issue with Chrome opening two ↵zsloan
tabs
2020-06-26Fixed issue where option to add members to an existing group was in the ↵zsloan
wrong place
2020-06-26Changed drop-down menus to include type sub-categorieszsloan
2020-06-24Temporary partial fix to issue of resources without info; need to add ↵zsloan
something that automatically inserts resources with default privileges
2020-06-24Fixed issue where scatterplot had different N than correlation results + ↵zsloan
fixed some aesthetic issues with correlatoin results table
2020-06-23Changed back previous 'fix' that was intended to fix issue where two tabs ↵zsloan
were opened when doing mapping/correlations; apparently this is a chrome specific problem so it will need to be deal twiht differently
2020-06-22Fixed issue with temp traits not working for trait page functions like ↵zsloan
correlation or mapping
2020-06-20Missed one issue introduced by last commitzsloan
2020-06-20Fixed ports for proxy (though I need to add the port to global variables) ↵zsloan
and also simplified the check_owner_or_admin function a little
2020-06-20Added some admin functionality and fixed issue with temp traitszsloan
2020-06-17A user's id is now set as a parameter if it doesn't already existauthentication_testzsloan
2020-06-17Fixed issue where removing traits from collection didn't work; previous fix ↵zsloan
wasn't working for some reason
2020-06-17Adding all the authentication stuffzsloan
2020-06-17Fixed issue caused by mapping scale sometimes being wrong + fixed Verify linkzsloan
2020-06-17Fixed issue where removing traits and then running a tool from collection ↵zsloan
page still included the removed traits
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-06-04Added back in trait info queries for situations where the proxy isn't runningzsloan
2020-06-04Really should have split this into many more commits:zsloan
- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code
2020-05-28Merge branch 'testing' of github.com:zsloan/genenetwork2 into testingzsloan
2020-05-28Added lines calling proxy for publish datasets + added some resource redis ↵zsloan
queries and a missing import for the hmac functions
2020-05-23Changed row highlight color to the more pale yellow it was beforezsloan
2020-05-21More adjusting to table widthszsloan
2020-05-21Made search result table width variable again and fixed row highlighting, ↵zsloan
though later I need to go through and redo a bunch of CSS stuff
2020-05-21Fixed search page table widths by setting max-width, at least for the time beingzsloan
2020-05-20Fixed issue when some case attribute values don't exist + added phenogen ↵zsloan
link to trait page
2020-05-18Added warning that 1 is being added when doing log transform on traits with ↵zsloan
sample values between 0 and 1
2020-05-18Partial fix to issue of the top margin being too small when using R/qtl and ↵zsloan
cofactors
2020-05-18Fixed Bar Chart left margin issue and fixed issue where 0 values didn't have ↵zsloan
+1 added when doing log transforms
2020-05-18Fixed issue with phenotype correlation table and added Plotly Chart Studio ↵zsloan
link to correlation scatterplots
2020-05-13Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-05-13Merge pull request #393 from pjotrp/epysodezsloan
Remove eventlet
2020-05-12Remove eventletepysodePjotr Prins
2020-05-12Merging Danny's changes and Bonface's changes to js importszsloan
2020-05-12Replaced redis_user_id with user_id since there's no real need for the first ↵zsloan
if things are working correctly
2020-05-12Added change for F2s in r/qtl and fixed minor issue in save_user in redis_toolszsloan
2020-05-12Merge pull request #391 from DannyArends/testingzsloan
Working categorical covariates for Rqtl
2020-05-12Mapping Rqtl using the correct way to use categorical covarsDanny Arends
2020-05-07Fixed blatseq issue and geno correlation issueblatseq_fixzsloan
2020-05-07Committing current progress on group manager + a minor fix in dataset.pyzsloan
2020-05-07Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵Danny Arends
testing
2020-05-06Merge pull request #388 from BonfaceKilz/build/missing_columns_scriptPjotr Prins
Add missing columns to db downloaded from AWS
2020-05-06Merge pull request #390 from BonfaceKilz/build/use-guix-datatables-dependencyPjotr Prins
Build/use guix datatables dependency
2020-05-06Added function for getting trait data type, plus added mapping scale changes ↵itp_covariate_testingzsloan
to Danny's partially fixed R/qtl code
2020-05-06Put in TODOs for MariaDB query and Design MatrixDanny Arends
2020-05-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-05-06Merge pull request #389 from DannyArends/testingzsloan
Fixed covariates in r/qtl mapping
2020-05-06Commiting a few minor changes plus returning rqtl_mapping.py to the same as ↵zsloan
on testing branch before merging Danny's changes and testing them
2020-05-06Disable saving of RDataDanny Arends
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