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AgeCommit message (Expand)Author
2022-10-06DEBUG: Collect more info to debug CI/CDFrederick Muriuki Muriithi
2022-10-06Check for incompatible datasets for various correlation types.Frederick Muriuki Muriithi
2022-10-05fix bug use target dataset for top n correlationAlexander_Kabui
2022-10-05remove data preprocessing for top n samplesAlexander_Kabui
2022-10-05mechanical-rob: Fix tests that were checking for the wrong thingFrederick Muriuki Muriithi
2022-10-05Handle correlation errorFrederick Muriuki Muriithi
2022-10-05Bug: Check for compatible datasets for a correlation typeFrederick Muriuki Muriithi
2022-10-05bug: Use target dataset when computing tissue correlationsFrederick Muriuki Muriithi
2022-10-04Fix bug where dataset_name was being passed into get_samplelist query instead...zsloan
2022-10-04Pass redis_conn to get_samplelistzsloan
2022-10-04Initialize result_list for /traits endpoint JSON outputzsloan
2022-10-04Remove unnecessary variableFrederick Muriuki Muriithi
2022-10-04Add more information to exception to help in debuggingFrederick Muriuki Muriithi
2022-10-03Bug: Don't process data for output earlyFrederick Muriuki Muriithi
2022-09-30Reformat statementFrederick Muriuki Muriithi
2022-09-30Remove unused table and simplify queryFrederick Muriuki Muriithi
2022-09-30Raise hard-limit on search results to 10k.Arun Isaac
2022-09-30Disregard permissions when displaying search results.Arun Isaac
2022-09-29Fix identation issues in attribute query codezsloan
2022-09-29Curry function passed to Maybe.apply.Arun Isaac
2022-09-29Hard-limit the number of search results.Arun Isaac
2022-09-29Support prefix search and range queries.Arun Isaac
2022-09-29Retrieve year as integer.Arun Isaac
2022-09-29Index prefixed fields and add values.Arun Isaac
2022-09-29Replace MonadicDictCursor with generator function.Arun Isaac
2022-09-29Open xapian database once, but SQL database once for each query.Arun Isaac
2022-09-29Remove empty first line in docstrings.Arun Isaac
2022-09-29Ignore None values early when initializing MonadicDict.Arun Isaac
2022-09-29Return monadic value from MonadicDictCursor.fetchone.Arun Isaac
2022-09-29Abstract out writing documents into a xapian database.Arun Isaac
2022-09-29Close xapian database even if error occurs.Arun Isaac
2022-09-29Remove empty rows, and conversion for outputFrederick Muriuki Muriithi
2022-09-29Add test for regressionFrederick Muriuki Muriithi
2022-09-28Do not assume transactions in database connections.Arun Isaac
2022-09-27Fix indentation in get_species_list for-loopzsloan
2022-09-27Unit Test: Fix unit test for Chromosome functions.Frederick Muriuki Muriithi
2022-09-26Add REST API endpoint for viewing a group's genotype file metadatazsloan
2022-09-26Get heatmap and mapping working again with changing to species.pyzsloan
2022-09-26Remove unused database_connection import from species.pyzsloan
2022-09-26Implement global search using xapian.Arun Isaac
2022-09-26Add indexing script for global search.Arun Isaac
2022-09-26Add xapian database connection utilities.Arun Isaac
2022-09-26Generalize sql_uri function to get any setting.Arun Isaac
2022-09-25Fix issue where the display name was used in the hmac for phenotype traitszsloan
2022-09-23Remove click handler on global search.Arun Isaac
2022-09-23Check docstring style using pylint.Arun Isaac
2022-09-22Fix bug in GeneUtil.py query where extra quotes caused an errorzsloan
2022-09-22Use passed in cursor instead of initialising a new cursor.Frederick Muriuki Muriithi
2022-09-22Provide database cursor as argument for TheSpecies and ChromosomesFrederick Muriuki Muriithi
2022-09-22Update tests: pass in missing arguments.Frederick Muriuki Muriithi
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