| Age | Commit message (Expand) | Author |
|---|
| 2023-04-06 | Commit updates for phenotype/publication metadata | zsloan |
| 2023-04-06 | `flask.current_app.config["SQL_URI"]` ==> `utility.tools.SQL_URI`...Genenetwork2 configs are a tad weird, and instead of using the configs
in `flask.current_app`, we need to use those in `utility.tools`.
| Frederick Muriuki Muriithi |
| 2023-04-06 | correlations: Provide more output to enable debug of errors. | Frederick Muriuki Muriithi |
| 2023-04-06 | Remove use of deprecated `gn3.db_utils.database_connector` function....Remove use of deprecated function and fix a myriad of bugs that rise
from its removal.
Issue: https://issues.genenetwork.org/issues/bugfix_coupling_current_app_and_db_utils
| Frederick Muriuki Muriithi |
| 2023-04-06 | oauth2: UI - Enable auto-selection of datasets to be linked...When a user selects a dataset in the search table, automatically add
it to the link table and remove it from the search table.
| Frederick Muriuki Muriithi |
| 2023-04-05 | oauth2: UI - Retain look and feel without using jQuery DataTables...Simplify the implementation by dropping the use of the jQuery
DataTables plugin - this avoids a lot of arising bugs while retaining
the UI look and feel until we have something working.
| Frederick Muriuki Muriithi |
| 2023-04-05 | oauth2: UI - Autoselect on user click...Try auto-selecting datasets on user click: not successful at this
point.
There are some weird bugs with the DataTables that I have not been
able to resolve yet.
| Frederick Muriuki Muriithi |
| 2023-04-05 | oauth2: UI - retain data in table attributes...Since the table data could change depending on user input, save the
state in the `data-*` attributes to enable update of tables on
changes.
| Frederick Muriuki Muriithi |
| 2023-04-04 | oauth2: Provide UI for linking genotype datasets. | Frederick Muriuki Muriithi |
| 2023-04-03 | Add conn.commit() for metadata edits | zsloan |
| 2023-03-28 | Re-add md5.min.js to search result template | zsloan |
| 2023-03-28 | Only include 'cytochrome AND P450' as part of the placeholder text | zsloan |
| 2023-03-25 | oauth2: Add UI to use to link data | Frederick Muriuki Muriithi |
| 2023-03-24 | oauth2: data: setup search as user types...Filter out data as the user types, with a short delay to prevent
searching on each and every character.
| Frederick Muriuki Muriithi |
| 2023-03-23 | oauth2: data: Provide a UI for linking data, with search....Provide a UI for the phenotype datasets with a search
interface (currently inactive) that is eventually going to allow for
linking the traits to user groups.
| Frederick Muriuki Muriithi |
| 2023-03-22 | Fix search result table width | zsloan |
| 2023-03-21 | The mean deaults to 'N/A' for phenotypes...The previous code caused an error when the mean was N/A (when trying to
take the float() of it)
| zsloan |
| 2023-03-21 | Remove session['user_details'] references since they seem to cause an error | zsloan |
| 2023-03-21 | Replace twitter-post-fetcher with Twitter's provided timeline link | zsloan |
| 2023-03-20 | Add link to diff page when sample-data is updated...* wqflask/wqflask/metadata_edits.py (update_phenotype): Add url to
diff page in flash message.
* wqflask/wqflask/templates/edit_phenotype.html: Render flash message
with HTML.
| Munyoki Kilyungi |
| 2023-03-20 | Fix minor pep-8 issues...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-03-20 | Disable editing case-attributes...ATM, editing case-attributes is very buggy.
* wqflask/tests/integration/wqflask/test_metadata_edits.py: Delete.
* wqflask/wqflask/decorators.py: Remove:
gn3.authentication.get_groups_by_user_uid import.
(case_attributes_edit_access): Delete.
* wqflask/tests/integration/wqflask/test_metadata_edits.py: Remove
wqflask.decorators.case_attributes_edit_access,
gn3.db.case_attributes.get_case_attributes,
gn3.db.case_attributes.get_unreviewed_diffs,
gn3.db.case_attributes.insert_case_attribute_audit,
gn3.db.case_attributes.reject_case_attribute and
gn3.db.case_attributes.approve_case_attribute.
(display_phenotype_metadata): Remove headers arg when rendering
template.
(update_phenotype): Remove case attribute headers list when updating a
phenotype.
(show_case_attribute_columns, update_case_attributes): Delete.
(reject_case_attribute_data, approve_case_attribute_data): Ditto.
* wqflask/wqflask/templates/edit_phenotype.html: Remove link that
shows all the listed case-attributes.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-03-20 | oauth2: Load menu and populate dropdown...In order to enable searching through the existing datasets for linking
with the auth system, we need a way to filter the data.
In this commit, I load the menu and load it onto a dropdown box as a
proof of concept to give an idea of some of the filters I can use down
the road to fetch the data.
This commit breaks the data-linking code. I will need to rework the
data-linking code entirely to get it working again.
| Frederick Muriuki Muriithi |
| 2023-03-20 | oauth2: Pass the offset in the query | Frederick Muriuki Muriithi |
| 2023-03-20 | oauth2: phenotypes: list/link at trait level...List/link the phenotypes at the trait level rather than at the dataset level.
| Frederick Muriuki Muriithi |
| 2023-03-20 | corrs: Handle JSONDecodeError...In the case that the JSON output from the correlations computation is
malformed, we capture that into a new exception an re-raise it to help
with debugging and fixing issues.
| Frederick Muriuki Muriithi |
| 2023-03-18 | oauth2: resources: toggle whether a resource is public or not. | Frederick Muriuki Muriithi |
| 2023-03-18 | oauth2: resources: Disallow duplicate resource names. | Frederick Muriuki Muriithi |
| 2023-03-17 | Fix correlation bug caused by a NULL UPDATE_TIME in the DB | zsloan |
| 2023-03-16 | Make the two Submit Change buttons consistent | zsloan |
| 2023-03-16 | Edit dataset dropdown JS to handle Species sub-categories | zsloan |
| 2023-03-16 | Change the UI for the phenotype editing page...Edit Sample Data and Edit Metadata are now two separate sections, and Edit Sample Data appears first
| zsloan |
| 2023-03-15 | minor globalsearch enhancement | Alexander_Kabui |
| 2023-03-15 | Change global search form id to gsearchform instead of searchform (since sear... | zsloan |
| 2023-03-15 | Replace REGEXP with LIKE in regular searches | zsloan |
| 2023-03-15 | Fix bug caused by RRIDs parseable as ints | zsloan |
| 2023-03-14 | fix responsiveness | Alexander_Kabui |
| 2023-03-14 | add shadow and border effect autocomplete | Alexander_Kabui |
| 2023-03-10 | oauth2: Extend scope for GN2 oauth2 client. | Frederick Muriuki Muriithi |
| 2023-03-09 | Merge pull request #772 from genenetwork/chores/code-refactoring...Chores/code refactoring | Alexander Kabui |
| 2023-03-09 | code cleanupchores/code-refactoring | Alexander_Kabui |
| 2023-03-09 | delete recent search handler | Alexander_Kabui |
| 2023-03-09 | Merge pull request #771 from genenetwork/chores/ui-enhancements...Chores/UI enhancements | Alexander Kabui |
| 2023-03-09 | fix miniform search id | Alexander_Kabui |
| 2023-03-09 | link to hint page;update form selector | Alexander_Kabui |
| 2023-03-08 | Add DataAnalyzer.py script to maintenance scripts | zsloan |
| 2023-03-08 | Account for truncated symbol lengths when setting the max_width for the symbo... | zsloan |
| 2023-03-08 | Change the way table width is set for search results table | zsloan |
| 2023-03-08 | Merge pull request #770 from genenetwork/feature/search-history...Feature/autocomplete global search | Alexander Kabui |
| 2023-03-08 | integrate to global searchfeature/search-history | Alexander_Kabui |
