Age | Commit message (Expand) | Author |
---|---|---|
2013-06-19 | Added nginx_conf directory to git tracking | Lei Yan |
2013-06-19 | Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns...in the correlation page weren't displaying | Lei Yan |
2013-06-19 | Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask...Conflicts: wqflask/base/data_set.py | Lei Yan |
2013-06-19 | :Merge git://github.com/zsloan/genenetwork into flask...Conflicts: wqflask/requirements.txt | Lei Yan |
2013-06-19 | Changed QTL parameter name to "get_qtl_info" on trait.py and...other places it's called, like search_results.py Added other trait info fields to correlation results page | Lei Yan |
2013-06-13 | Fixed issue where too much memory was used as a result of creating a...dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | Lei Yan |
2013-06-13 | Put the template html for the quick search page when all trait types...are displayed in a separate file that is included in quick_search.html | Zachary Sloan |
2013-06-12 | Fixed a couple issues with the template that caused the...regular search results and show trait page to not display | Zachary Sloan |
2013-06-11 | Put trait info for correlation results page into a dictionary instead...of storing list of GeneralTrait objects Added print statements to track memory usage | Lei Yan |
2013-05-31 | Fixed the location column for the quick search page...Began writing some jquery to automatically open the first tab within each species tab on the quick search page (not done yet) | Zachary Sloan |
2013-05-30 | Rewrote some code in get_trait_info in dataset.py...Added spearman correlation to show_corr_results and template | Lei Yan |
2013-05-28 | Have correlation values appearing in a table in the template...Use scipy to calculate pearson correlation instead of old GN code | Lei Yan |
2013-05-23 | Worked on rewriting the function in data_set.py that gets the sample...values for each trait | Lei Yan |
2013-05-23 | Changed the way the query that gets sample ids is generated | Lei Yan |
2013-05-23 | Now calculates correlation values for traits, but not yet in template | Lei Yan |
2013-05-21 | Added caching to the search page (for both regular and quick searckes) | Zachary Sloan |
2013-05-17 | Did a little work with quick search page | Zachary Sloan |
2013-05-16 | Made the first level of quick search tabs species, followed by...trait type (was the opposite before Rob commented on it earlier today) | Zachary Sloan |
2013-05-09 | Just added some print statements so I can show matrix/vector...shapes to Tony | Zachary Sloan |
2013-05-08 | Merge branch 'flask' of git://github.com/leiyan/genenetwork into flask | Zachary Sloan |
2013-05-08 | Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset and their sample values | Lei Yan |
2013-05-07 | Made some progress adding species/group tabs to the quick search result page to...make the results easier to navigate | Zachary Sloan |
2013-05-02 | Got quick search code running (but not displaying properly)...Code that processes subset of snps works, in process of putting into a class | Zachary Sloan |
2013-04-30 | Merge branch 'flask' of git://github.com/leiyan/genenetwork into flask | Zachary Sloan |
2013-04-30 | Changed path to log file...Added server port to configuration file | Lei Yan |
2013-04-30 | Did a little with correlation_plot.py | Zachary Sloan |
2013-04-26 | Added file that checks how much time is added to a loop's runtime by print st......Continued work on file that processes each individual chunk of the snp iterator/plink input | Zachary Sloan |
2013-04-24 | Began writing code that writes some objects used in LMM to redis...and writes/reads eachitem in the plink_input | Zachary Sloan |
2013-04-24 | Added original pylintrc | Zachary Sloan |
2013-04-24 | Checking in quick_search_table.py before using pylin | Zachary Sloan |
2013-04-24 | Fixed issue with the part of quick_search_table.py that loads phenotype traits | Zachary Sloan |
2013-04-23 | Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | Zachary Sloan |
2013-04-19 | Fixed the issue with the x-axis coordinates for marker regression plot | Zachary Sloan |
2013-04-18 | The plink_input is split into chunks that are stored in temp_data, but...we might decide to store it differently | Zachary Sloan |
2013-04-18 | LMM code now reads in gzipped pickled plink snp iterator object | Zachary Sloan |
2013-04-18 | input file is now loaded by pickle | Zachary Sloan |
2013-04-17 | Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file | Zachary Sloan |
2013-04-17 | Added a benchmark for running the chunks code on the list of snps | Zachary Sloan |
2013-04-17 | Renamed chunk_test.py to chunks.py | Zachary Sloan |
2013-04-17 | Updated chunk_test.py | Zachary Sloan |
2013-04-17 | Added chunk_test.py which compared my/ and sam's split into...chunks algorithms' accuracy/speed | Zachary Sloan |
2013-04-17 | Wrote code that tests the effectiveness of the function that divides a...list into a given number of chunks | Zachary Sloan |
2013-04-17 | Fixed small issue with the divide_into_chunks function...that caused one too many chunks to be created | Zachary Sloan |
2013-04-16 | Wrote functions that divide a list into a specified number of chunks...(to be used on the list of snps for the LMM code) | Zachary Sloan |
2013-04-16 | Checking in before making some changes | Zachary Sloan |
2013-04-16 | Put most of the code calculating human association statistics in...lmm.py into a separate function | Zachary Sloan |
2013-04-11 | Fixed a bug with quick_search_table.py...Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines | Zachary Sloan |
2013-04-10 | Created template for quick search page...Fixed a couple bugs with quick_search_table.py | Zachary Sloan |
2013-04-09 | Have quick search working for phenotypes | Zachary Sloan |
2013-04-09 | Nick's code works fine with human data...Added option to limit results based on lod score (which also changes the y-axis of the plot) | Zachary Sloan |