| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-01-10 | Normalized the y axis for each manhattan plot section | Zachary Sloan |
| 2013-01-10 | The plots now correctly appear above/below each other....Committing before trying to combine all the manhattan plot segments | Zachary Sloan |
| 2013-01-10 | Edited marker_regression.coffee to make every sub-manhattan plot...for each chromosome display Created css file for the marker_regression page Currently has display issue where the permutation histogram is overlapping with the manhattan plot | Zachary Sloan |
| 2013-01-10 | Made Chromosome class in marker_regression.coffee; current...it writes each chromosome's manhattan plot on top of each other. This commit is before trying to fix that. | Zachary Sloan |
| 2013-01-10 | Made x-axis values into ints; committing before trying to add multiple graphs...for each chromosome | Zachary Sloan |
| 2013-01-10 | Worked with the manhattan plot coffeescript to set x-axis and change...the plot point sizes and remove lines | Zachary Sloan |
| 2013-01-09 | Manhattan plot results are appearing correctly for chromosome 1 | Zachary Sloan |
| 2013-01-09 | The histogram coffeescript is now in its own class and the graph...still displays correctly | Zachary Sloan |
| 2013-01-09 | Checking in before putting the histogram coffeescript into its own...class | Zachary Sloan |
| 2013-01-09 | More or less finished the permutation histogram | Zachary Sloan |
| 2013-01-09 | Got the permutation plot working as a line plot; still need to make...it into a bar graph, though | Zachary Sloan |
| 2013-01-09 | jqplot added | Zachary Sloan |
| 2013-01-09 | Got the marker regression page to display again...Passed lrs_array values as js_data for the permutation histogram | Zachary Sloan |
| 2013-01-08 | js_data is being printed out (seemingly) correctly now for the...marker_regression page | Zachary Sloan |
| 2013-01-08 | Created IndChromosome class in species.py and wrote functions for...chromosome-related attributes Began to try and pass qtlreaper results as js_data to use when drawing graphs | Zachary Sloan |
| 2013-01-08 | Deleted some unnecessary code in marker_regression.py and fixed some bugs...Added a couple utility functions to the Chromosomes class in species.py | Zachary Sloan |
| 2013-01-04 | Continued rewriting marker_regression.py code | Zachary Sloan |
| 2013-01-04 | Correct results are being returned from reaper for the marker regression page | Zachary Sloan |
| 2013-01-03 | Began working on marker_regression.py and created Chromosomes class...in species.py | Zachary Sloan |
| 2013-01-03 | marker_regression page is up again | Zachary Sloan |
| 2013-01-03 | Created template for marek regression page and made the compute button direct...to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py | Zachary Sloan |
| 2012-12-20 | Changed layout of marker regression options | Zachary Sloan |
| 2012-12-20 | The control locus field in the interval mapping settings is now disabled if..."choose closest control" is set to "yes" | Zachary Sloan |
| 2012-12-20 | Made composite mapping options show/hide for the interval mapping section | Zachary Sloan |
| 2012-12-20 | More changes to the layout of interval mapping options | Zachary Sloan |
| 2012-12-20 | Continued to customize the interval mapping menu | Zachary Sloan |
| 2012-12-20 | Improved appearance/layout of the interval mapping tab using bootstrap | Zachary Sloan |
| 2012-12-20 | Form data passed via POST for marker regression...Removed "Use Parents" and "Use Weighted" Created text box to input # permutations for pair scan | Zachary Sloan |
| 2012-12-18 | Changed html for the marker regression tab...Created file show_trait_mapping_tools.coffee to handle submitting the form to the marker regression page Changed form name/id in show_trait.html to "trait_data_form" | Zachary Sloan |
| 2012-12-18 | Created new file species.py and species class object TheSpecies...Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests | Zachary Sloan |
| 2012-12-07 | Got links working for statistics table labels | Zachary Sloan |
| 2012-12-07 | Got basic statistics in show_trait to display the correct number...of samples for each group Got show_trait page to display for genotype traits | Zachary Sloan |
| 2012-12-07 | Got show_trait page to appear again for phenotype traits...Need to see why other samples list doesn't appear for traits in BXDPublishedPhenotypes | Zachary Sloan |
| 2012-12-06 | All 10 stats working | Zachary Sloan |
| 2012-12-06 | Continued work on basic statistics table in show_trait...Continued work towards getting show_trait to work with phenotype traits | Zachary Sloan |
| 2012-12-06 | Added minimum/maximum to basic statistics table...Continued bug-shooting related to getting show_trait running with phenotype traits | Zachary Sloan |
| 2012-12-06 | Got show_trait running again for MrnaAssay traits | Zachary Sloan |
| 2012-12-06 | Made many small changes to show_trait/data_set/search_results/trait to...remove use of the formData object and cursor | Zachary Sloan |
| 2012-12-05 | Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) | Zachary Sloan |
| 2012-12-05 | Continued to make changes related to getting rid of cursor/db_conn...and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again | Zachary Sloan |
| 2012-12-04 | Changed parser to allow quotes (i.e. name="rw williams")...Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy | Zachary Sloan |
| 2012-12-04 | Began changing references to cursor/db_conn to use sqlalchemy...Wrote function for phenotype author searches | Zachary Sloan |
| 2012-11-30 | Added example of escaping strings now that trasitioning to simple SQLAlchemy | Zachary Sloan |
| 2012-11-30 | Started switching to using basic sqlalchemy to handle db connection/queries...Began fixing bugs related to this fix, still in progress | Zachary Sloan |
| 2012-11-30 | Finished pValue search...Got headers working in search page | Zachary Sloan |
| 2012-11-30 | Got searches working for RANGE and MEAN commands...Created a file where renamed variables will be listed for future reference | Zachary Sloan |
| 2012-11-29 | Changed a number of variables (riset to group, db to dataset)...Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes | Zachary Sloan |
| 2012-11-29 | Got LRS searches working with 5 parameters | Zachary Sloan |
| 2012-11-28 | Got cisLRS search working (in web service) for searches with > or < (ex. LRS>99)...search_term is always a list now ([99] in the example LRS>99) | Zachary Sloan |
| 2012-11-28 | Changed parser to split by ">=" and "<=" | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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