| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-09-01 | There was a missing quote in one of the javascript imports added by the...PR changing them to get fetched from GUIX; I need to check and see if there are other situations like this * wqflask/wqflask/templates/mapping_results.html - Added missing quote | zsloan |
| 2020-09-01 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-09-01 | Fixed indent issue that could cause error when showing the haplotype...analyst in the mapping chromosome view * wqflask/wqflask/marker_regression/display_mapping_results.py - Indented a bit of code that was wrongly indented in such a way that the variable "ind" wasn't set if "plotbxd" is 0 | zsloan |
| 2020-09-01 | Merge pull request #434 from BonfaceKilz/Build/use-md5-js-from-guix...Build/use md5 js from guix | BonfaceKilz |
| 2020-09-01 | Add check for "md5.min.js" library...* test/requests/link_checker.py: Add it. | BonfaceKilz |
| 2020-09-01 | Use "md5.min.js" from guix | BonfaceKilz |
| 2020-09-01 | Merge pull request #433 from BonfaceKilz/Build/remove-cdns...Build/remove cdns | BonfaceKilz |
| 2020-09-01 | Check availability of several js and css files...* test/requests/link_checker.py: Check availability of: chroma.min.js; d3-tip.js; d3.min.js; underscore.min.js; nv.d3.min.css; and jquery.qtip.min.js | BonfaceKilz |
| 2020-09-01 | Remove commented out script tags that references CDNs | BonfaceKilz |
| 2020-09-01 | Replace CDNs with packages from guix | BonfaceKilz |
| 2020-09-01 | Merge pull request #432 from BonfaceKilz/Fix/add-missing-apostrophe...Add missing apostrophe in url_for args | BonfaceKilz |
| 2020-09-01 | Add missing apostrophe in url_for args | BonfaceKilz |
| 2020-08-31 | Merge pull request #431 from BonfaceKilz/Build/add-d3-tip...Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Fixed text on not_authenticated to use proper grammar...* wqflask/wqflask/templates/new_security/not_authenticated.html - Changed "this" to "these" since "data" is plural | zsloan |
| 2020-08-31 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-31 | Fixed issue that was causing updating resource default privileges to not...work * wqflask/utility/redis_tools.py - There was an issue where resources wouldn't be updated if they already existed. This is because the code didn't yet account for the "update" tag (that is meant to give the option of preventing updating resources when running the script to enter all resources into Redis). I changed the logic to add a resource if "update" is True or the resource doesn't already exist (so it won't if update is False and the resource exists). | zsloan |
| 2020-08-31 | Add check for "d3-tip.js" js library...* test/requests/link_checker.py (check_packaged_js_files): Add it. | BonfaceKilz |
| 2020-08-31 | Merge pull request #429 from BonfaceKilz/chore/add-gh-templates...Add github templates for filing bugs, user stories/ features and PRs | BonfaceKilz |
| 2020-08-31 | Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Merge pull request #430 from BonfaceKilz/Build/add-chroma-js...Build/add chroma js | BonfaceKilz |
| 2020-08-31 | Add github templates for filing bugs, user stories/ features and PRs...* .github/ISSUE_TEMPLATE/bug_report.md : Add template for filing bug reports. * .github/ISSUE_TEMPLATE/feature_request.md: Add template for filing a feature. * .github/ISSUE_TEMPLATE/user_story.md: Add a template for creating a user story for a feature. * .github/PULL_REQUEST_TEMPLATE.md: Add a template for filing a PR. | BonfaceKilz |
| 2020-08-31 | Add check for "chroma.js" dataTables extension plugin...* test/requests/link_checker.py (check_packaged_js_files): Add it. | BonfaceKilz |
| 2020-08-31 | Use chroma from guix...* wqflask/wqflask/templates/correlation_matrix.html: Fetch chroma from guix profile | BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f......Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB * wqflask/utility/authentication_tools.py - Changed get_group_code to return an empty string instead of None if InbredSetCode doesn't exist for a dataset group * wqflask/wqflask/views.py - Changed zipped export filename to "export_(datetime)" instead of "collection_(datetime)" since this export can occur from both the collection page and the global search page | zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from...the collection page (the filename wasn't being set) * wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in export_traits_csv because it wasn't being set before | zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git...* wqflask/wqflask/static/new/packages/DataTables/: Delete folder. | BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group...that isn't already associated with a GN2 account and sends the user an e-mail; still need to test * wqflask/wqflask/group_manager.py - Added logic sending an invitation e-mail if user_details aren't found for any of the e-mails provided when adding users to a group | zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail...* wqflask/wqflask/user_login.py - Added send_invitation_email function, which does what it says | zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-25 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
| 2020-08-25 | Merge pull request #427 from BonfaceKilz/Build/add-scientific-js-datatables-p......Build/add scientific js datatables plugin | zsloan |
| 2020-08-26 | Add check for "scientific.js" dataTables extension plugin...* test/requests/link_checker.py (check_packaged_file): Add it. | BonfaceKilz |
| 2020-08-25 | This should fix an issue where the new qtlreaper wouldn't work properlty...with genotypes that only have cM positions * wqflask/wqflask/marker_regression/qtlreaper_mapping.py - parse_reaper_output is changed to check if cM and Mb exist in output when creating marker obs * wqflask/wqflask/marker_regression/run_mapping.py - Changed export_mapping_results to properly deal with all combinations of cM and Mb positions (both and either/or) | zsloan |
| 2020-08-25 | Merge pull request #425 from BonfaceKilz/refactor/extract-htmlgen-methods-to-......Refactor/extract htmlgen methods to wrapper class | zsloan |
| 2020-08-25 | Use scientific.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-25 | Merge pull request #426 from BonfaceKilz/Build/use-naturaljs-datatables-exten......Build/use naturaljs datatables extensions | zsloan |
| 2020-08-24 | Add check for "natural.js" in Mechanical Rob...* test/requests/link_checker.py (check_packaged_file): Add it. | BonfaceKilz |
| 2020-08-24 | Use natural.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Remove non-keyword args...* wqflask/wqflask/marker_regression/display_mapping_results.py (HtmlGenWrapper)[create_image_tag]: Remove "src" and "alt" as function parameters. | BonfaceKilz |
| 2020-08-24 | Replace "HtmlGen" method calls with those from "HtmlGenWrapper"...* wqflask/wqflask/marker_regression/display_mapping_results.py (DisplayMappingResults): Replace direct calls to HtmlGen with methods from the constructed wrapper class "HtmlGenWrapper". | BonfaceKilz |
| 2020-08-24 | Add new wrapper class for HtmlGen method...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add new class | BonfaceKilz |
| 2020-08-24 | Add tests for the HtmlGenWrapper class...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Add new tests | BonfaceKilz |
| 2020-08-24 | Fix some pylint errors...* wqflask/wqflask/marker_regression/display_mapping_results.py: Remove unused imports and add fix some pylint errors | BonfaceKilz |
| 2020-08-24 | Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is does not have py3 support so it's important to remove references to it. | BonfaceKilz |
| 2020-08-24 | Rename file...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Rename test_display_marking_results.py to test_display_mapping_results.py | BonfaceKilz |
| 2020-08-24 | Fix failing test...* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data introduced in 092212df Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com> | BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand...* wqflask/wqflask/marker_regression/display_mapping_results.py - defined im_drawer in drawHaplotypeBand to fix errror and removed an unused import | zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to the dynamically set TEMPDIR * wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location with TEMPDIR | zsloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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