| Age | Commit message (Expand) | Author |
|---|
| 2018-03-16 | Just undoing tabulator changes so I can push other changes | zsloan |
| 2018-03-15 | Changed appearance of mapping and correlation options on trait page...Fixed issue where changed sample values were not passed to qtlreaper mapping ("Interval Mapping")
Loading factors and their plot are hidden in situations where there's some error with calculating principal components
Added GEMMA description and changed order of descriptions for mapping options on trait page
| zsloan |
| 2018-03-14 | Add tests for main web functionality | Muriithi Frederick Muriuki |
| 2018-03-12 | Add tests to check links. | Muriithi Frederick Muriuki |
| 2018-03-09 | Add link_checker module...* Add the module that will hold the code to test the links on the
system.
| Muriithi Frederick Muriuki |
| 2018-03-09 | Use argparse to handle arguments...* Use argparse to handle commandline arguments.
* Create initial layout of how the code might end up - lots of the code
is currently commented out.
| Muriithi Frederick Muriuki |
| 2018-03-02 | Added option to display selected covariates for GEMMA mapping...Changed layout/appearance of mapping options
Partially fixed issue with deleting collections
Changes to correlation table still in progress; having trouble getting tabulator to load JSON
| zsloan |
| 2018-02-26 | Merge /home/lei/gene into testing | zsloan |
| 2018-02-26 | Committing some in-progress changes related to loading correlation page from ... | zsloan |
| 2018-02-23 | Add tests to check that the UI is setup correctly...* Check that the links for OAuth2 logins via ORCID and GitHub are setup
correctly.
| Muriithi Frederick Muriuki |
| 2018-02-23 | Provide connections to elasticsearch...* Provide connections to elasticsearch at various points in the code.
These oversight was caught while running tests.
| Muriithi Frederick Muriuki |
| 2018-02-23 | Add new tests for orcid logins | Muriithi Frederick Muriuki |
| 2018-02-23 | Add new test for github logins | Muriithi Frederick Muriuki |
| 2018-02-23 | Remove failing code...* With the parameterized module, the testcase cannot be run
independently at this time.
| Muriithi Frederick Muriuki |
| 2018-02-23 | update corr scatterplot interface | Lei Yan |
| 2018-02-21 | Simplify test. Check for content, rather than url...* The test functions were very similar, so this commit refactors out the
common test code to a single method, and passes in the data to the
test using the parameterized package.
* Check that the page content after a login attempt is the expected
content, rather than checking the url.
| Muriithi Frederick Muriuki |
| 2018-02-21 | Fix assumption of existing collection...* When logging in, if a user selects "Import existing collections", the
system would throw an exception, since Redis would return a NoneType,
which would then be accessed by json.loads(), which doesn't seem to
know how to process that.
This fixes that, by providing a string representing an empty json
array ("[]"), in place of the NoneType.
| Muriithi Frederick Muriuki |
| 2018-02-19 | Add more login tests. | Muriithi Frederick Muriuki |
| 2018-02-19 | Add a runner for all integration tests. | Muriithi Frederick Muriuki |
| 2018-02-19 | Add test for local login...* Add an integration test to test that the login process for users
registered locally to genenetwork2 works as expected.
| Muriithi Frederick Muriuki |
| 2018-02-19 | Create parametrized superclass for tests...* Since the tests require that some parameters be provided while running
the tests, create a class that helps abstract away the details of
retrieving and setting the expected parameters.
| Muriithi Frederick Muriuki |
| 2018-02-19 | Rename file and move common code...* Rename the file to make it an importable module
* Refactor the test to move common code out to a super class.
| Muriithi Frederick Muriuki |
| 2018-02-16 | Add registration test...* Add integration test to check the registration process.
| Muriithi Frederick Muriuki |
| 2018-02-16 | Merge branch 'pjotrp-gn-testing-es' into testing | Muriithi Frederick Muriuki |
| 2018-02-15 | Requests added | Pjotr Prins |
| 2018-02-15 | Added unittest example | Pjotr Prins |
| 2018-02-15 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
| 2018-02-15 | Fix conflict | Pjotr Prins |
| 2018-02-14 | Added empty collection error page to git, since it wasn't on production | zsloan |
| 2018-02-13 | Resolved conflict | zsloan |
| 2018-02-13 | Just committing very minor change to correlation table so I can pull other ch... | zsloan |
| 2018-02-13 | Merge pull request #285 from pjotrp/testing...@zsloan: we should introduce full parameter checking and sensible defaults | zsloan |
| 2018-02-13 | Add tests for Registration process. | Muriithi Frederick Muriuki |
| 2018-02-13 | Update module to make it more testable...* Update functions to make them more testable.
* Update code using updated functions.
| Muriithi Frederick Muriuki |
| 2018-02-13 | @zsloan: we should introduce full parameter checking and sensible defaults fo......work on. It will help bug tracking.
Probably fixes #279
| Pjotr Prins |
| 2018-02-12 | Changed code parsing GEMMA output to fix issue where it wasn't getting the co... | zsloan |
| 2018-02-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2018-02-12 | Quick parallel correlation should work, though I'm not sure why the code sudd......Switched correlation table to tabulator
| zsloan |
| 2018-02-12 | Merge pull request #277 from pjotrp/gn-production...Gn production | zsloan |
| 2018-02-11 | Added gunicorn pid so we can not run twice | Pjotr Prins |
| 2018-02-11 | Using eventlet workers | zsloan |
| 2018-02-10 | Fix env variable $GEMMA_WRAPPER_COMMAND | Pjotr Prins |
| 2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins |
| 2018-02-09 | Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
| Muriithi Frederick Muriuki |
| 2018-02-09 | Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
| Muriithi Frederick Muriuki |
| 2018-02-05 | Add code to allow user to change password...* After the email is sent to the user, there is need to provide a way
for the user to actually change their password, and have the results
saved.
| Muriithi Frederick Muriuki |
| 2018-02-05 | Refactor common items to more generic methods....* Refactor code that can be used in more than one place to a more
generic method/function that's called by other methods
| Muriithi Frederick Muriuki |
| 2018-02-05 | Send emails for forgotten passwords...* Update the code so that it sends out emails for the "forgot password"
feature.
| Muriithi Frederick Muriuki |
