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2013-04-05Got Nick's code working with the MDP datasets under the BXD group,Zachary Sloan
2013-04-05Made changes to get pylmm code working with HMDP datasetsZachary Sloan
2013-04-02Finished adding code that uses the plink genotype data ifZachary Sloan
2013-04-02Committing before splitting code that runs pylmm with plink filesZachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-28quick_search_table.py seems to be running OK for the PublishXRefZachary Sloan
2013-03-28quick_search_table.py now seems to run correctly for ProbeSetXRefZachary Sloan
2013-03-28Committing before putting quick_search_table code in classesZachary Sloan
2013-03-27Got quick_search_table.py to a point where it runs; willZachary Sloan
2013-03-27Worked on trying to get results for quick search to displayZachary Sloan
2013-03-26Continued working on quick_search_table.py, which now getsZachary Sloan
2013-03-26Created quick_search_table.py to create table with all of theZachary Sloan
2013-03-26Just checking in code while in the process of trying to getZachary Sloan
2013-03-22Began creating templates for login/registrationZachary Sloan
2013-03-22Added secure_server.pyZachary Sloan
2013-03-22Removed zach_settings.py from git trackingZachary Sloan
2013-03-21Did some work towards getting Nick's code working with our plinkZachary Sloan
2013-03-19In the process of trying to use Nick's pylmmKinship.py code toZachary Sloan
2013-03-19Added Nick's input.py file which uses plink .ped files as inputZachary Sloan
2013-03-19Searches work for the full access human datasets with mRNA assayZachary Sloan
2013-03-15Began work with implementing general searchZachary Sloan
2013-03-15Changes related to searching for selected points in marker regression plotZachary Sloan
2013-03-13Merge branch 'flask' of http://github.com/zsloan/genenetwork into flaskZachary Sloan
2013-03-13Added some to notesZachary Sloan
2013-03-12Added the script generating probesetfreeze data matrix filesZachary Sloan
2013-03-12Highlighting points works in Firefox but still doesn't work in chromeZachary Sloan
2013-03-12Got cashing working with pickleZachary Sloan
2013-03-09Trying to get caching working with pickle nowZachary Sloan
2013-03-08Caching is working for marker regression but really slowlyZachary Sloan
2013-03-08Refactored GWAS function in lmm.pyZachary Sloan
2013-03-07Progress bar is now completely workingZachary Sloan
2013-03-07Have first 45% of progress bar workingZachary Sloan
2013-03-07Created file temp_data to store data related to progressZachary Sloan
2013-03-06Stored percent of calculate_kinship function completion inZachary Sloan
2013-03-06Improved positioning/size of copy/print/save buttons forZachary Sloan
2013-03-05Implemented DataTables; there are now options to download the markerZachary Sloan
2013-03-02Created generate_probesetfreeze_file to create theZachary Sloan
2013-02-28Updated benchmark.py to aggregate run times when you run theZachary Sloan
2013-02-28Added benchmark.py that compares the time of various operationsZachary Sloan
2013-02-28Chromosome labels on marker regression plot are centeredZachary Sloan
2013-02-23A static progress bar now displays when loading the marker regression resultsZachary Sloan
2013-02-22Added some to notesZachary Sloan
2013-02-21Added underscore.jsZachary Sloan
2013-02-21Adding genotypes and new_genotypes (json files) directories to gitZachary Sloan
2013-02-21Add my_pylmm packageZachary Sloan
2013-02-21Plot points and chromosome lines are now correctZachary Sloan
2013-02-20Did more work with manhattan plot, trying to fix a small issueZachary Sloan
2013-02-20Created y-axisZachary Sloan
2013-02-19Manhattan plot and chromosome lines are all correct nowZachary Sloan
2013-02-19Made lines for manhattan plot proportional to chromosome lengthsZachary Sloan
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