| Age | Commit message (Expand) | Author |
|---|
| 2015-07-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2015-07-02 | Merge pull request #81 from lomereiter/fix_exporting...Fix SVG/PDF exporting | zsloan |
| 2015-07-02 | Combined searches that didn't work previously should work now, including cis ... | zsloan |
| 2015-07-02 | fix typos | Artem Tarasov |
| 2015-07-02 | fix #80 | Artem Tarasov |
| 2015-07-02 | use button for returning to full view | Artem Tarasov |
| 2015-07-02 | added CairoSVG to misc/requirements | Artem Tarasov |
| 2015-07-01 | Needed to add a couple parenthesis for transLRS searches | zsloan |
| 2015-07-01 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2015-07-01 | cis and trans LRS searches now work. Still need to get them working in combin... | zsloan |
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69...Fixes #69 | zsloan |
| 2015-06-29 | Merge pull request #77 from lomereiter/fix_sql...SQL security fixes | zsloan |
| 2015-06-26 | Fixed minor bug where the static loading bar would remain after the mapping r... | zsloan |
| 2015-06-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2015-06-26 | Fixed bug where mapping results sometimes wouldn't display. This would occur...due to a chromosome (in this case the last) not having any markers.
Improved the way plink gets its path/command to use a method similar to the
one Pjotr used with pylmm. I'll also do this for the other mapping methods.
Fixed issue where the Y axis would always say LOD score. It now says LRS for
mapping methods that return LRS
Switched interval mapping (qtl reaper) to use the marker_regression template and removed the interval_mapping template (since it's unnecessary)
Some commented out changes remain (in show_trait_mapping_tools and create_lodchart) from when I was attempting to open the mapping results
in a new page. I had resolved every issue but the mapping javascript (lod_chart) not
being able to access js_data (which has all the result data; markers, p-values, etc). I'm pretty
sure that this is because js_data was inserted into the html after the page was loaded while
the chart code ran immediately. I experimented with adding a short timeout to the mapping
javascript and data table javascript, but while it worked for the table it did not work for the
mapping figure. I don't know why this is.
| zsloan |
| 2015-06-26 | Added license file | pjotrp |
| 2015-06-22 | Merge branch 'master' of github.com:genenetwork/genenetwork2...Conflicts:
wqflask/wqflask/templates/marker_regression.html
| zsloan |
| 2015-06-22 | Just a few minor changes before pulling Artem's fix to the mapping issue. | zsloan |
| 2015-06-22 | Merge pull request #75 from lomereiter/fix_search...fix genotype search | zsloan |
| 2015-06-22 | Merge pull request #76 from lomereiter/fix_mapping_results...fix mapping results loading | zsloan |
| 2015-06-22 | escape docs query | Artem Tarasov |
| 2015-06-22 | fixed a few potential security issues | Artem Tarasov |
| 2015-06-21 | fix mapping results loading | Artem Tarasov |
| 2015-06-20 | fix genotype search | Artem Tarasov |
| 2015-06-18 | Fixed issue that prevented multiple mapping submissions without refreshing. A... | zsloan |
| 2015-06-18 | removed unused function | Artem Tarasov |
| 2015-06-18 | fix all_samples_ordered...move duplicated code into a method,
handle the case of missing f1/f12 correctly
| Artem Tarasov |
| 2015-06-18 | add missing line to webqtlUtil | Artem Tarasov |
| 2015-06-17 | Now you can expand/contract tabs on the trait page by click anywhere on the bar | zsloan |
| 2015-06-16 | Finished adding all the extra tools/links below the trait details | zsloan |
| 2015-06-05 | Added back in some of the options on the trait page; Add, Find, and Verify no... | zsloan |
| 2015-06-04 | Fixed a minor issue that was causing position search to not work. | zsloan |
| 2015-06-02 | Wildcards can now be appended to mRNA assay searches, but isn't working corre... | zsloan |
| 2015-06-02 | Added Panduka's Genotation tool link to the trait page, along with the Gene, ... | zsloan |
| 2015-06-02 | Wildcard search should now work for Genotype searches | zsloan |
| 2015-06-02 | Wildcard search (*) works for regular mRNA assay and phenotype searches and f... | zsloan |
| 2015-05-26 | Merge pull request #60 from lomereiter/pp...add missing file | zsloan |
| 2015-05-26 | add missing file | Artem Tarasov |
| 2015-05-26 | Merge pull request #58 from lomereiter/pp...Use NVD3 for bar chart and probability plot | zsloan |
| 2015-05-26 | fix terminology | Artem Tarasov |
| 2015-05-26 | use NVD3 for bar charts...added informative tooltips and error bars
| Artem Tarasov |
| 2015-05-23 | pp group selection | Artem Tarasov |
| 2015-05-23 | fix group selection in blocking by index | Artem Tarasov |
| 2015-05-23 | Fix trait grouping | Artem Tarasov |
| 2015-05-23 | new probability plot (using NVD3 library)...* z scores are computed on the client side (using jStat library)
* added Shapiro-Wilk test results
| Artem Tarasov |
| 2015-05-22 | Fixed issue where correlation didn't work for human traits (and probably some... | zsloan |
| 2015-05-21 | Changed the digits for additive effect and megabases in the search results table | zsloan |
| 2015-05-20 | Merge pull request #53 from lomereiter/bar_chart_improvements...Bar chart improvements | zsloan |
| 2015-05-20 | revert database.py setup | Artem Tarasov |
| 2015-05-20 | bar charts polished...* fixed bar chart width (two bars were invisible)
* disabled basic stats update effects, if they are not visible
* fix: unchecked samples were shown in charts
(because attr('checked') was used instead of prop('checked'))
* bar chart gets redrawn after checkbox changes
* edit_data_change is also called when clicking buttons
from the 'Block samples' panel
* better bar chart transitions (use sample name as d3 key function)
| Artem Tarasov |
