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2020-08-03Fixed issue where DataTables was initialized twice when selecting...cofactors, leading to an error in non-Chrome browsers * wqflask/wqflask/static/new/javascript/get_covariates_from_collection.js - Added a line that checks if the table already exists before initializing it; this issue is caused by a circular import issue, but I'm not sure how to get around it yet zsloan
2020-07-29Fixed error that occured for new resources in check_admin...* wqflask/utility/authentication_tools.py: the code forgot to get resource_info when a resource wasn't in Redis yet, causing an error when it was referenced, so I added a line getting the resource info (and also a couple comments for other lines related to authentication) zsloan
2020-07-28Fixes issue where zooming in on mapping results in some browsers caused...the original tab's contents to be removed * wqflask/wqflask/templates/mapping_results.html: minor change to add spaces for readability * wqflask/wqflask/marker_regression/display_mapping_results.py: Removed "return" from chrView and rangeView since it appears to remove original tab's contents in some browers when submitting form zsloan
2020-07-28Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-07-28Merge pull request #414 from BonfaceKilz/tests/add-tests-for-base-module...Tests/add tests for base modulezsloan
2020-07-28Setting owner to None since super-users should allow for people like Rob or m...zsloan
2020-07-27Clean up webqtlCaseData class...* wqflask/base/webqtlCaseData.py (webqtlCaseData): - Remove obsolete 'Object' from Class inheritance - Replace 'str' with 'case_data_string' variable- it collides with python in-builts - Use pythonic 'is Not None' form - Remove redundancy in 'if' forms - Update copyright header BonfaceKilz
2020-07-27Add unittests for WebqtlCaseData...* wqflask/tests/base/test_webqtl_case_data.py: Add it BonfaceKilz
2020-07-27Abstract away redundant code into set_dataset_key method...* wqflask/base/data_set.py (Dataset): - Add set_dataset_key - Remove __call__ method BonfaceKilz
2020-07-27Test that non-existent keys in Dataset are set correctly...* wqflask/tests/base/test_data_set.py: Add more tests. BonfaceKilz
2020-07-27Use the correct redis instance inside object...* wqflask/base/data_set.py (DatasetType): Use object's redis instance BonfaceKilz
2020-07-27Check that Redis is called correctly...* wqflask/tests/base/test_data_set.py: assert that `set` and `get` are called correctly BonfaceKilz
2020-07-27Add test case for empty redis instance for DatasetType...* wqflask/tests/base/test_data_set.py(tests): Check correct results are returned when Redis is empty * wqflask/tests/base/data.py(tests): New file. Adds json test data. BonfaceKilz
2020-07-27Apply py-lint...* wqflask/tests/base/test_data_set.py: Apply pylint BonfaceKilz
2020-07-27Merge pull request #411 from pjotrp/testing...Updating docsPjotr Prins
2020-07-27Merge branch 'testing' into testingPjotr Prins
2020-07-27Merge pull request #412 from BonfaceKilz/docs/document-how-to-run-tests...Docs/document how to run testsPjotr Prins
2020-07-27Document how to run tests...* doc/testing.org: - Update how Mechanical Robs works. Python replaced Ruby as the testing tool - Add section that describes how to run unit tests BonfaceKilz
2020-07-26Document how to run tests...* README.md: - Add details on how to run unit tests - Update link that points to Mechanical Rob BonfaceKilz
2020-07-26Delete tests/unittests folder...* tests/unittests: Delete it. All unittests were moved to wqflask/tests in 3d6483e8 BonfaceKilz
2020-07-25Updating docs and show how to include a local Python modulePjotr Prins
2020-07-25The variable is never defined, so let's default to "none"Pjotr Prins
2020-07-25Animated gifsPjotr Prins
2020-07-25Removing bimbam check. We'll get rid of bimbam anyway.Pjotr Prins
2020-07-25Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
2020-07-24Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add testszsloan
2020-07-25Update import statement in test_general_object.py...* test/unittest/base/test_general_object.py: replace the import statement to use the module path instead of the path referenced from PYTHONPATH BonfaceKilz
2020-07-24Added missing JS library that caused adding markers to collections to not workzsloan
2020-07-24Minor aesthetic indentation change in htmlzsloan
2020-07-24Added to menu option for user to change some basic user information, like nam...zsloan
2020-07-24Fixed queries that were wrongly returning Data IDs as Nszsloan
2020-07-24Move .coveragerc to wqflask/...* .coveragerc: Move .coveragerc to wqflask so that the coverage test tool can pick it up automatically without having to add an `--rc-file` flag BonfaceKilz
2020-07-24Add basic config for coverage tool...* .coveragerc: add it BonfaceKilz
2020-07-24Rename test_numify.py to test_formatting.pyBonfaceKilz
2020-07-24Add unittests for *utility/test_numify*BonfaceKilz
2020-07-24Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. BonfaceKilz
2020-07-24Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` BonfaceKilz
2020-07-24Add basic unittestsBonfaceKilz
2020-07-24Remove unreachable conditional...* wqflask/base/GeneralObject.py(__getattr__): remove if statement that is unreachable BonfaceKilz
2020-07-24Add more tests for general_object...* wqflask/tests/base/test_general_object.py: test getattr() and `==` BonfaceKilz
2020-07-24Add more tests for GeneralObject...* wqflask/tests/base/test_general_object.py: test object's magic methods BonfaceKilz
2020-07-24Move .coveragerc to wqflask/...* .coveragerc: Move .coveragerc to wqflask so that the coverage test tool can pick it up automatically without having to add an `--rc-file` flag BonfaceKilz
2020-07-24Add generated coverage reports and binary to .gitignoreBonfaceKilz
2020-07-24Add basic config for coverage tool...* .coveragerc: add it BonfaceKilz
2020-07-24Rename test_numify.py to test_formatting.pyBonfaceKilz
2020-07-24Add unittests for *base/data_set*BonfaceKilz
2020-07-24Inject redis instance into DatasetType class...* wqflask/base/data_set.py(DatasetType): - Rename Redis instance to r to avoid confusion and name collisions - Inject the redis instance into Dataset_Types class to make it easier to test - Rename Dataset_Types class to DatasetType class BonfaceKilz
2020-07-24Add unittests for *utility/test_numify*BonfaceKilz
2020-07-24Apply autopep-8...* wqflask/utility/formatting.py: apply it BonfaceKilz
2020-07-24Add zero to num_repr dictionary...* wqflask/utility/formatting.py(numify): Update `num_repr` to have a zero BonfaceKilz
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