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genenetwork2
acenteno
authentication_test
blatseq_fix
chores/code-refactoring
chores/lmdb-integration
chores/replace-cdns
chores/script-textfile-generator
correlations-return-fewer-results
debug-too-many-connections-error
decouple_tools_and_wqflask_app
development
epysode
feature/search-history
feature/textfile-generator
gn-master
guix-shell
hook-up-auth-to-traits-page
itp_covariate_testing
jupyter_notebooks_ui
lmdb-code/refactoring
master
notebooks_api
oauth2-migrate-user-details-and-data
partial-correlations
partial_corr_ui_rework
pcorrs_targets
penguin2
phewas
production
proxy-integration
refactor-configurations
refactor-data_set_py-20220920
revert-366-360_update_htmlgen
rework-genotype-linking
run-corrs-in-external-process
stable
testing
GeneNetwork (2nd generation)
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Author
2019-05-24
Merge branch 'api' of github.com:zsloan/genenetwork2 into api
zsloan
2019-05-24
Added status to error messages
zsloan
2019-05-24
Put API readme in correct place
zsloan
2019-05-24
Return JSON error instead of html now
zsloan
2019-05-24
Added currently api progress, which will henceforth be appropriately committe...
zsloan
2019-05-24
Replaced qtlreaper Dataset object with python object
zsloan
2019-05-23
Fixed issue where some descriptions caused an error
zsloan
2019-05-17
Made check for trait IDs a bit more secure to hopefully avoid any errors simi...
zsloan
2019-05-17
Fixed issue that caused error for traits with no unigene id
zsloan
2019-05-14
Added all of the third party links from GN1
zsloan
2019-05-08
Fixed issue where descriptions sometimes had unicode characters appear strangely
zsloan
2019-05-07
Added link to GeneBridge to trait page
zsloan
2019-05-07
Fixed issue where, if the user searched for a location range in the SNP Brows...
zsloan
2019-05-06
Removed horizontal scroll from twitter field on index page
zsloan
2019-05-06
Added link to Affiliates section of index page
zsloan
2019-05-06
Made some changes Rob asked for to index page; reorganized some items and mad...
zsloan
2019-05-06
Removed some unused imports of htmlgen
zsloan
2019-04-26
Issue where GEMMA LOCO mapping didn't work when samples were edited out shoul...
zsloan
2019-04-26
Fixed issue where changed smaple values didn't show up in haplotype analyst r...
zsloan
2019-04-18
Fixed issue that caused removed strains to still appear in the haplotype anal...
zsloan
2019-04-12
Fixed PDF links in reference to point to the PDFs in GN1
zsloan
2019-04-12
- Improved Interval Analyst table appearance in mapping results
zsloan
2019-04-10
Removed option to upload file for submitting traits, since it doesn't current...
zsloan
2019-04-10
Fixed issue that was causing submitted temp traits to not work
zsloan
2019-04-05
Fixed issue that caused error for phenotype searches (kind of a quick fix and...
zsloan
2019-04-05
Fixed issue where Max LRS column displayed the mean in global search results
zsloan
2019-04-04
Fixed issue where dataset_menu_structure.json included some groups with no vi...
zsloan
2019-04-03
Fixed an issue that caused global phenotype search to often not work and cert...
zsloan
2019-04-03
Fixed issue where strains could be added twice in the SNP browser, causing so...
zsloan
2019-04-02
Fixed issue where non-GEMMA mapping would throw an error because it would sti...
zsloan
2019-03-29
Fixed issue that caused PCA results to be different in GN2 than in GN1; one r...
zsloan
2019-03-29
Updated UCSC Verify link-out from hg19 to hg38 for humans
zsloan
2019-03-28
Added link to GN2 document github wiki to index page
zsloan
2019-03-28
Possibly fixed issue where PCA traits didn't calculate for certain sets of tr...
zsloan
2019-03-27
Changed gen_select_dataset.py to be able to show multiple datasets under the ...
zsloan
2019-03-25
- Added SVG export to basic stats figures
zsloan
2019-03-19
Added option to add PCA traits to collection from correlation matrix page
zsloan
2019-03-18
- Added PCA traits to correlation matrix. You can't change their names yet or...
zsloan
2019-03-13
Zooming into chromosome or remapping with GEMMA is now very fast, since it st...
zsloan
2019-03-11
Changed header style, because the jumbotrons previously used didn't look that...
zsloan
2019-03-11
Added default empty collection when user is logged in and attempts to add tra...
zsloan
2019-03-07
Changed the way covariates are displayed when selected for mapping
zsloan
2019-03-07
Made violin plots for different groups/sample-sets different colors and match...
zsloan
2019-03-07
Fixed issue where pressing enter in the search page text area would go to a n...
zsloan
2019-03-07
Fixed issue where correlation results containing NaN results sorted incorrectly
zsloan
2019-03-06
Cofactor option for correlation scatterplot was broken; it should be fixed now
zsloan
2019-03-05
Made R/qtl metho/model names better and added some javascript to disable wron...
zsloan
2019-03-04
Fixed excel export to show all columns
zsloan
2019-03-04
- Added z-score transformation
zsloan
2019-03-01
Added alternating point colors for manhattan plots
zsloan
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