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2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-04On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-02-03On branch masterLei Yan
2014-01-31On branch masterLei Yan
2014-01-31On branch masterLei Yan
2014-01-30The calculations for the manhattan plot are now run from the command...line as a background process, allowing multiple to be run at the same time without the time increasing. Zachary Sloan
2014-01-30Added forgotten html page to repo...Fixed bugs where- - User tried to login with an email address that hasn't been registered - User tries to register an email address that was already registered Testing is still needed to confirm bugs were fixed properly and new ones weren't introduced Sam
2014-01-30Before trying to fix user login issueSam
2014-01-30Most of the work is done towards running lmm.py from the command line...and storing the results in redis Zachary Sloan
2014-01-29Limited number of markers in marker regression result table to...those with a lod score > 2 Did some work towards adding the colored backgrounds to chromosome areas in the manhattan plot Changed the last two chromosomes for human manhattan plots to X and X/Y Started work on writing a script that can independently run the pyLMM code and store the results in redis Zachary Sloan
2014-01-25On branch masterLei Yan
2014-01-25On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24On branch masterLei Yan
2014-01-24Committer: root <root@alexandria.uthsc.edu>...On branch master root
2014-01-24Added natural sort to sort the index column for the sample data in...the trait page Hid the Quick Search on the index page until it is working well. Started writing a file to run the pyLMM code in the background to avoid memory issues/timing out Zachary Sloan
2014-01-24Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2014-01-23Histogram is working...Fixed some bug with generating the manhattan plot for the HLC data set Zachary Sloan
2014-01-03Wrote some code for the histogram figure...Changed some code in dataset to try and track down the issue with Amelie's file Zachary Sloan
2013-12-31Finished code to remove a trait or multiple traits from a collection...Wrote code to make buttons a little cleaner and more obvious when dealing with collections (they now enable themselves when traits that can be added or removed to/from a collection are selected) Sam
2013-12-30Fixed issue where box plots initially appeared below the bar chart...instead of in the second tab In the process of trying to fix the genofile to json parser so we can map Amelie's rat data In the process of having the color of bars in the bar chart "follow" them when they are resorted. Zachary Sloan
2013-12-30Collections changesSam
2013-12-18Merge /home/zas1024/geneSam
2013-12-18Fixed issue where "Type" and "Dataset" had no default values for...the home page drop-downs Zachary Sloan
2013-12-18Merge /home/zas1024/geneLei Yan
2013-12-18Add a coffee script file for correlation scatter plot function.Lei Yan
2013-12-17Added the option to choose which method to use for the interval...mapping function (pyLMM or qtl reaper) Zachary Sloan
2013-12-12Put the code that rebuilds the bar chart into a function...Still need to fix issue where attribute colors don't stay with their associated samples/strains Zachary Sloan
2013-12-11Got sort by name/value buttons working and committing before trying...to put some of the d3 code into a function Zachary Sloan
2013-12-11Got color by trait working, but still need to add a legend and make...some other small changes (like removing samples that don't overlap with the selected trait) Tentatively removed jquery-ui from base.html; I'm not sure if we're still using this anywhere, but removing it doesn't seem to have had an impact on the trait page Zachary Sloan
2013-12-05Now trims selected trait's values by the samples of the primary trait and...gets their distinct values Created function that creates a dictionary of distinct values and their corresponding colors Zachary Sloan
2013-12-05Interval map graph now works properly...Tried to export trait data for "color by trait" function Zachary Sloan
2013-11-28Adding to collection now shows collection you added to and has informative me...Sam
2013-11-27Clicking a trait in "color by trait" now gets all of its sample values...that will be used to color the bar graph Zachary Sloan
2013-11-27Can now view trait list of a collection after clicking the collection...in the modal that pops up after clicking "Color by Trait" above the bar chart Zachary Sloan
2013-11-26Made some progress towards getting the traits inside a collection to display ...Zachary Sloan
2013-11-25Added HSNIH.json to ignore due to its sizeZachary Sloan
2013-11-25Merge branch 'temp'Zachary Sloan
2013-11-25Got the interval mapping results into a tableZachary Sloan
2013-11-22Add color pickerLei Yan
2013-11-22Did some work towards getting the interval mapping page workingZachary Sloan
2013-11-21Added apt-get dist-upgrade to notesZachary Sloan
2013-11-20Merge /home/zas1024/geneLei Yan
2013-11-20Created a box plot...Made the bar chart use a gradient if colored by something with more than 6 distinct values Put figures in tabs under the Charts/Figures part of the trait page Zachary Sloan
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