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2022-01-06bin: Set GN2_PROFILE from GUIX_ENVIRONMENT.Arun Isaac
`guix shell' sets the profile path in an environment variable---GUIX_ENVIRONMENT. There is no need to pass it explicity as an input in GN2_PROFILE. * README.md: Remove all references to GN2_PROFILE. * bin/genenetwork2: Set GN2_PROFILE from GUIX_ENVIRONMENT. Do not check the value of GN2_PROFILE now that it is set automatically. Remove all references to GN2_PROFILE in example invocations.
2022-01-05metadata_edits.py: Remove duplicate importsBonfaceKilz
2022-01-05Display correct message on the # of editsBonfaceKilz
2022-01-05Insert data to db by checking the tracked deletions, mods, or addsBonfaceKilz
Prior to this, we only checked for the json files with contained the modifications. However, in the case of double deletions, and double inserts, the data would have been stored in the db anyway; which is a false representation of changes.
2022-01-05Check for any double-inserts or double-deletionsBonfaceKilz
Track any double-inserts or double-deletions
2022-01-05Remove pudb debug statementsBonfaceKilz
2022-01-05metadata_edits: Return early if uploaded csv has not been editedBonfaceKilz
2022-01-05display_diffs: Remove in-line styling from "pre" tagBonfaceKilz
2022-01-05Remove pudb lineBonfaceKilz
2022-01-05display_diffs: Use datatables for every tableBonfaceKilz
2022-01-05Make "Files for approval:" text a "h2"BonfaceKilz
2022-01-05Add interface for displaying diffs in a html pageBonfaceKilz
2022-01-05Use datatables to display approved and rejected filesBonfaceKilz
2022-01-03Added something that should work as a 'universal' solution for decoding ↵zsloan
trait descriptions in search results, since there were still some traits with encoding issues
2022-01-03Fixed wrong logic for checking for null or empty string trait descriptions ↵zsloan
in search results
2021-12-23If phenotype metadata is cached, authenticate for those traits (otherwise ↵zsloan
authentication happens in create_trait at line 105)
2021-12-23Set new_traits_metadata so caching is used (previously was always an empty dict)zsloan
2021-12-20This should fix ProbeSet trait descriptions in the search results, which ↵zsloan
previousluy weren't showing the proper description
2021-12-17Some updates to the DOL genotypes conversion scriptzsloan
2021-12-15Edited html for index pagezsloan
2021-12-14Removed min-width from container div, since it seems to have preventd ↵zsloan
horizontal scrolling when the window is small
2021-12-14Includes dataset name when creating SimpleNamespace dataset_ob, since it's ↵zsloan
needed during authentication
2021-12-13Fixes issue that caused LRS searches that specify position to not work ↵zsloan
properly; the queries had to be changed after integrating the change that also pulls the Max LRS info in the original query
2021-12-13pep8 formattingAlexander Kabui
2021-12-13modify endpoint for test wgcnaAlexander Kabui
2021-12-13modify template to show error generatedAlexander Kabui
2021-12-13handle connection error & other exceptionsAlexander Kabui
2021-12-13parse powers to use from form dataAlexander Kabui
2021-12-13add new endpoint:for test gn3 wgcnaAlexander Kabui
2021-12-07Made some changes to the index page HTMLArthur Centeno
2021-12-03Add mapping_scale to mapping_results.html forum inputszsloan
2021-12-03Properly set start position for cM mapping, to prevent overflow + remove ↵zsloan
some unnecessary commented out lines
2021-12-03Make sure mapping_scale is always physic when using GEMMAzsloan
2021-12-03Prevent points prior to the X axis from being displayed in mapping figure ↵zsloan
when zoomed into a sub-range on a chromosome
2021-12-02Gave the twitter feed div a background color to make it more visually ↵zsloan
distinct from surrounding content + removed top margin from ul elements that was added by uikit
2021-12-02Moved the UIkit CSS from base.html to index_page.html (btw Arthur, never add ↵zsloan
CSS files to base.html - it makes their styling apply to every single GN page)
2021-12-02Removed colons from Links headers and removed margin-bottom for H2 elementszsloan
2021-12-02Made Affiliates a subcategory of Linkszsloan
2021-12-02Changed index pagee HTML to be more consistent, adding indentation, removed ↵zsloan
commented out HTML
2021-12-02Increased min-width for showtrait-main-div to prevent mapping description ↵zsloan
text from overflowing
2021-12-02Increased mid-width for container element for mapping figure to prevent it ↵zsloan
from shrinking when the browser window is smaller (which prevents the links, etc, from overlapping properly with the image)
2021-12-01Figure out that we are using the wrong db_webqtl_s!Pjotr Prins
2021-12-01Introduce GN3_PYTHONPATH environment variablePjotr Prins
2021-11-27display_files.html: Place "approved" before "rejected" sectionBonfaceKilz
2021-11-25wqflask: metadata_edits: Support deletions and insertions from csvBonfaceKilz
2021-11-25Remove useless commentBonfaceKilz
2021-11-25Delete noisy loggingBonfaceKilz
2021-11-24Merge pull request #624 from Alexanderlacuna/feature/correlation-optimization2BonfaceKilz
Feature/correlation optimization2
2021-11-23wqflask: metadata_edits: Sort files from most recentBonfaceKilz
2021-11-23wqflask: metadata_edits: Remove "\n\n" check with something elseBonfaceKilz
In excel, "\n\n" is replaced with ",,,," and this leads to a value error.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 19:24:16 +0000