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2015-03-14Removing all references to is_testingPjotr Prins
2015-03-14Working on kinship: GN2 and simple matrix multiplicatino agreePjotr Prins
2015-03-14More MAFPjotr Prins
2015-03-14Replace missing values with MAFPjotr Prins
2015-03-14Testing kinship works on small GPjotr Prins
2015-03-14Merge branch 'zsloan' into devPjotr Prins
2015-03-14kinship: working on pylmmPjotr Prins
2015-03-13runlmm.py: remove extraneous conversionPjotr Prins
2015-03-13& RefactoringPjotr Prins
2015-03-13& runlmm.py: added assertions for default runPjotr Prins
2015-03-12lmm: use deep-copy to avoid side-effectsPjotr Prins
2015-03-12weird fix for lmm result - Python weirdnessPjotr Prins
2015-03-12Check GPjotr Prins
2015-03-12Debug infoPjotr Prins
2015-03-12process_plink.py: remove unused filePjotr Prins
2015-03-12Combined searches now work for most termsZachary Sloan
Fixed appearance of the scatterplot matrix Changed pylmm code back because of an error after I had switched to Pjotr's code
2015-03-12Just committing changes to search so I can pull to production branchZachary Sloan
2015-03-11runlmm.py: messagePjotr Prins
2015-03-11Adding multi-core kinship.pyPjotr Prins
2015-03-11Merged lmm branchPjotr Prins
2015-03-11lmm.py: change message on running from CLIPjotr Prins
2015-03-11& Added testing option, now the results matchPjotr Prins
2015-03-10NormalisationPjotr Prins
2015-03-10lmm.py: debugging outputPjotr Prins
2015-03-10Missing genotypes and normalizePjotr Prins
2015-03-10Populationg Redis from TSV dataPjotr Prins
2015-03-10Refactored tsvreader outPjotr Prins
2015-03-10Factoring out tsvreadersPjotr Prins
2015-03-10convertlmm.py: add SNP namesPjotr Prins
2015-03-10Turn HAB encoding into pylmm genotypingPjotr Prins
2015-03-09Add HAB encodingPjotr Prins
2015-03-09Write genotype file non-transposedPjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09plink: missing values in bimPjotr Prins
2015-03-09Now we can use print in lamdbaPjotr Prins
2015-03-09Not using numpy - is part of the callerPjotr Prins
2015-03-09plink: no need to know the number of SNPs, but you need INDsPjotr Prins
2015-03-09plink supportPjotr Prins
2015-03-09convertlmm.py: options.genoPjotr Prins
2015-03-09convertlmm.py: plink supportPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-07Write phenotypesPjotr Prins
2015-03-07Kinship converterPjotr Prins
2015-03-05Check commandPjotr Prins
2015-03-05Kinship 1.0 parserPjotr Prins
2015-03-05Kinship file format support (reader and writer)Pjotr Prins
2015-03-05Convert textual kinship filePjotr Prins
2015-03-05Helpers to split out functionalityPjotr Prins
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