| Age | Commit message (Expand) | Author |
|---|
| 2022-08-12 | Integrate rust correlations. Deduplicate similar code....- Use rust correlations rather than the slower python one
- Remove code duplicated in the
`wqflask/wqflask/correlation/rust_correlation.py` module within the
`compute_correlation_rust` function.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Add a profiling script...Add a script to enable profiling the code.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Fix some issues with the tests. Add notes in code for improvements. | Frederick Muriuki Muriithi |
| 2022-08-11 | Add data-trait-info attribute to checkboxes on search results page...Currently there's a separate trait_info_str function in
search_results.py, because search_results.py doesn't build the trait
objects (so it can't use the one in collect.py unless I change that to
accept traits as either a GeneralTrait class or dict - which might be
better, I'm not sure)
| zsloan |
| 2022-08-11 | Refactor: separate the three correlation types...Refactor the code such that each correlation type (sample, tissue,
literature) is computed in its own function. This makes the code
clearer, and helps reduce repetition.
| Frederick Muriuki Muriithi |
| 2022-08-11 | Fix correlation tests: Fix the test message. | Frederick Muriuki Muriithi |
| 2022-08-11 | Check for keys before using them. | Frederick Muriuki Muriithi |
| 2022-08-11 | Update format to prevent tissue correlation from failing...Update the data format of returned values so that it conforms with
expectatitions.
| Frederick Muriuki Muriithi |
| 2022-08-10 | Check that the correlations work as expected. | Frederick Muriuki Muriithi |
| 2022-08-10 | Fix formatting for legibility | Frederick Muriuki Muriithi |
| 2022-08-10 | code to merge results;minor fixes | Alexander_Kabui |
| 2022-08-10 | compute top n tissue results | Alexander_Kabui |
| 2022-08-10 | add code to compute top n tissue results | Alexander_Kabui |
| 2022-08-09 | Fix minor bug. | Frederick Muriuki Muriithi |
| 2022-08-09 | Integrate rust correlations. Deduplicate similar code....- Use rust correlations rather than the slower python one
- Remove code duplicated in the
`wqflask/wqflask/correlation/rust_correlation.py` module within the
`compute_correlation_rust` function.
| Frederick Muriuki Muriithi |
| 2022-08-09 | Display the probeset name in the editing form...* wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to
the h1 tag.
| Munyoki Kilyungi |
| 2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page...* wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button.
Make button green. Move form element into the "container" div. Add
"container" class to form. Left justify labels, and the button.
Remove ":" from labels.
| Munyoki Kilyungi |
| 2022-08-09 | Delete "diff" section...For both the edit phenotype and probeset pages, the diffs can be
viewed from history.html.
* wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs"
section.
* wqflask/wqflask/templates/edit_probeset.html: Ditto.
| Munyoki Kilyungi |
| 2022-08-09 | Remove "diff" logic from edit_probeset...* wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for
fetching diff. Move that...
(show_history): ... here
* wqflask/wqflask/templates/edit_probeset.html: Update template to
show diffs in a history.html. Reposition and rename the h1 tag of
this page.
| Munyoki Kilyungi |
| 2022-08-09 | Update h1 title of history page...ATM, we don't show the name of the phenotype whose history we are
changing. That may be updated in a future commit.
* wqflask/wqflask/templates/edit_history.html: Reword h1 and remove
"{{}}" which results in a jinja error.
| Munyoki Kilyungi |
| 2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi |
| 2022-08-09 | Integrate rust correlation for "sample" correlation selection...Integrate the use of the rust code to compute the correlations for the
"sample" correlation selection.
| Frederick Muriuki Muriithi |
| 2022-08-09 | Pass trait values (X) as list not string...The trait values (X values) are converted to JSON within the
`run_correlation` call. Since JSON has the ability to represent lists
of objects, there is no point for the added conversion to and from
strings.
| Frederick Muriuki Muriithi |
| 2022-08-08 | remove unnessary append to list | Alexander_Kabui |
| 2022-08-08 | remove test;test is redundant | Alexander_Kabui |
| 2022-08-08 | tests refactoring | Alexander_Kabui |
| 2022-08-05 | Include partial_correlations.js in the search page template | zsloan |
| 2022-08-02 | Define ROrRho and corr_method in JS to get rid of some of the template logic ... | zsloan |
| 2022-08-02 | Move logic for creating authors display string to the server-side Python code... | zsloan |
| 2022-08-02 | Move logic for creating authors display string to the server-side Python code | zsloan |
| 2022-08-02 | Remove unused parameters from trait page sample table's column render functions | zsloan |
| 2022-08-02 | Remove unused parameters from gsearch_pheno.html's column render functions | zsloan |
| 2022-08-02 | Remove unused parameters from gsearch_gene.html's column render functions | zsloan |
| 2022-08-02 | Remove unused parameters from collections/view.html column render functions | zsloan |
| 2022-08-02 | Remove unused parameters from correlation_page.html column render functions | zsloan |
| 2022-08-02 | Remove unused parameters from column render functions in search_result_page.html | zsloan |
| 2022-08-02 | Condense some conditional logic | zsloan |
| 2022-08-01 | Remove console logs from scatterplot.js | zsloan |
| 2022-08-01 | Change Make Default button to Save Settings | zsloan |
| 2022-08-01 | Add date/time to trait page export | zsloan |
| 2022-08-01 | Add header/description to partial correlation page | zsloan |
| 2022-08-01 | Add index column and phenotype group code to trait export | zsloan |
| 2022-08-01 | Change min-width to something more reasonable (will put this in CSS later) | zsloan |
| 2022-08-01 | Fix BNW link by making it https | zsloan |
| 2022-08-01 | Remove commented out code | zsloan |
| 2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi |
| 2022-07-27 | From console log from plotly_probability_plot.js | zsloan |
| 2022-07-27 | Change most variables in show_trait.js to camelCase | zsloan |
| 2022-07-27 | Define drawCallback in trait page tableSettings, since this table shouldn't c... | zsloan |
| 2022-07-27 | Use create_datatable.js to create trait page sample data tables + change most... | zsloan |
