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2020-11-20Remove glossary markdown template...* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs BonfaceKilz
2020-11-19Removed lines that check that all traits are part of the same group,...since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits) zsloan
2020-11-18Fixed issue where the cofactor trait descriptions didn't work correctly...for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits) zsloan
2020-11-18Changed default Low/High colors for the correlation scatterplot cofactor...coloring to Blue/Red respectively (was originally Light Grey/Black) zsloan
2020-11-18Added some jquery closing the "Add To Collection" colorbox window after...its form is submitted zsloan
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if the...cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits) zsloan
2020-11-18Removed console.log and commented out statements from...get_traits_from_collection.js zsloan
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.js...(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot) zsloan
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleList...Test sample listBonfaceKilz
2020-11-18use f strings in marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-18use f strings in marker_regression/plink_mappingAlexanderlacuna
2020-11-17use better function namesAlexanderlacuna
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-13Switched to using f-strings instead of the older method of string...formatting zsloan
2020-11-13Switched to using boolean casting to check if various trait attributes...exist zsloan
2020-11-13- Added Show/Hide Columns options and included the trait_list.css file...which including styling for said options - Changed some column widths to avoid text wrapping zsloan
2020-11-13Added some css to trait_list.css restyling the "show/hide column"...buttons when they're active. Not really pleased with the result, but styling a button to look depressed is a pain zsloan
2020-11-13Changed some if/else statements to just initializing the variables + the...if statement and fixed "lrs_location" to "location" for target genotypes zsloan
2020-11-13Added cdn imports for fontawesome to correlation page and changed...superscript i's to fontawesome icons for the glossary links in column headers zsloan
2020-11-13Replaced superscript i's for glossary links in search result table...headers with fontawesome icons zsloan
2020-11-12Import fontawesome css/js and used its info character for glossary links on s...zsloan
2020-11-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/co...zsloan
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-12refactor codeAlexanderlacuna
2020-11-12add pep8 fixes in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12add test for parse gemma output in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-12modify tests for marker regressionAlexanderlacuna
2020-11-11add tests for marker_regression/rqtl_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/qtlreaper_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/run_mapping.pyAlexanderlacuna
2020-11-11add tests for marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-11Added Bonface to the footerzsloan
2020-11-11Changed some column widths and removed the width for description so it can va...zsloan
2020-11-11- Fixed an issue causing the phenotype abbreviation to not be displayed prope......- Set default description to N/A when there's no trait description for phenotype traits zsloan
2020-11-11Switched checking if a trait is confidential to checking if it has a pubmed I...zsloan
2020-11-11Merge pull request #477 from BonfaceKilz/feature/add-glossary-page...Feature/add glossary pageBonfaceKilz
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/ad...BonfaceKilz
2020-11-11Update image widthBonfaceKilz
2020-11-11Add basic markdown styling...* wqflask/wqflask/static/new/css/markdown.css: New file. * wqflask/wqflask/templates/glossary.html: add markdown id to markdown container. BonfaceKilz
2020-11-10Changed logic for creating temp trait SampleList to account for both traits e...zsloan
2020-11-10* wqflask/wqflask/correlation/show_corr_results.py - Changed some of the para......* wqflask/wqflask/templates_correlation_page.html - Fixed some column defs and removed unused table configuration code zsloan
2020-11-10Fixed issue where strain values in bytes needed to be decoded when loading a ...zsloan
2020-11-10Changed "BXD-Harvested" to "BXD-Longevity" since that group was renamed and u...zsloan
2020-11-10Added CSS file for all pages that include a table of traitszsloan
2020-11-10add tests for write input for browser in marker_regression/run_mapping.pyAlexanderlacuna
2020-11-10Add missing links and some markdown formatting(underline, bold)...* wqflask/wqflask/static/markdown/glossary.md: Update file. BonfaceKilz
2020-11-10add tests for export_mapping_results in marker_regression/run_mapping.pyAlexanderlacuna
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