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2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-16Many changes, including:zsloan
- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-16Made change that causes new traits to be at the top of a collection + ↵zsloan
prevents duplicates
2020-04-13Changed Locus to Marker in table and fixed an issue with trying to zoom in ↵zsloan
on a chromosome after downloading permutation results
2020-04-13Fixed issue that caused export for HET3-ITP traits to not work due to the ↵zsloan
backslash in one of the case attribute names + added a couple links for stats table items
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-04-04Changed Y axis on permutation histogram from Frequency to Countzsloan
2020-04-04Changed Y axis on permutation histogram from Frequency to Countzsloan
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Updated R/qtl description textzsloan
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Added Chart Studio back to trait page Plotly figures and switched the ↵zsloan
PNG/SVG download icons; also upgraded Plotly, though I'm sure we'll want to move that out of git later
2020-04-04Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-04Indices on the trait page sample table are now static, to allow for ↵zsloan
selecting ranges of indices after sorting a column
2020-04-03Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-03Added option to select cofactors from collection for R/qtlzsloan
Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-04-03Fixed permutation histogram to show correct LRS/LOD measure on X axiszsloan
2020-04-02Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-02Fixed a dumb issue that broke the buttons on trait list pages like search ↵zsloan
results or correlation results
2020-04-01Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-01Forgot to rearrange search result page buttons in previous commit, plus ↵zsloan
fixed an issue where .csv was missing from some filenames
2020-04-01Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-04-01Adding export option to correlation pagezsloan
Added ability to control in code the export file name Reorganized View Collection options
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Fixed issue where GEMMA wasn't showing up for certain groupszsloan
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Temporary fix for issue with RData rqtl results having shifted postiionszsloan
2020-03-27Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into HEADGN2
2020-03-27Added integration for using RData files with R/qtl, plus some other changes ↵zsloan
to how it decides which mapping methods to display on the trait page
2020-03-25Added fix for issue when creating collections (related to hmac import change)zsloan
2020-03-25Added fix for issue when creating collections (related to hmac import change)zsloan
2020-03-19Made a minor change just to help qtlreaper deal with genotype files with ↵zsloan
positions in bases instead of megabases
2020-03-19Fixed digits issue, though still need to figure out how to increase gap ↵zsloan
between y axis and title
2020-03-19Made a minor change just to help qtlreaper deal with genotype files with ↵zsloan
positions in bases instead of megabases
2020-03-15Fixed digits issue, though still need to figure out how to increase gap ↵zsloan
between y axis and title
2020-03-12Added back a library that is apparently used for the Copy To Other ↵zsloan
Collection feature
2020-03-12Made some changes to how the mapping Y axis is determined/drawn; left in the ↵zsloan
commented-out old code until we're sure this works well
2020-03-11Fixed issue that caused authors to be displayed incorrectly sometimeszsloan
2020-03-10Added back macaque monkey to dropdown generation, not sure why it was ↵zsloan
removed; need to ask Rob
2020-03-10Fixed issue that caused some problems when verifying hmaczsloan
2020-03-09It seems that the cause might be that my user session was still active on ↵zsloan
production, which made the logic not work
2020-03-09Made change that hopefully fixes the Redis issue in production; I think it's ↵zsloan
because HGETALL returns an empty list instead of None
2020-03-09I think I found the issue; I only saw it on production instead of my branch ↵zsloan
because it was tied to a session expiring
2020-03-09Change that might fix issue on productionzsloan
2020-03-09Added the option to change collection nameszsloan
Remooved a couple imports that weren't used
2020-03-09I think this should complete consolidating all the collections code.zsloan
2020-03-03I made a pretty big mistake removing this file; I forgot that it was still ↵zsloan
used for some collection stuff
2020-03-03Missed one more reference in helper_functionszsloan
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