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2018-01-19Add more configuration variables....* Add configurations for elasticsearch and github. Muriithi Frederick Muriuki
2018-01-19Add save_user() function...* On successful login via OAuth2, save the details of the user in elasticsearch store, to avoid hitting the external provider for the basic details. Muriithi Frederick Muriuki
2018-01-19Add elasticsearch module to the path...* Add some code to set up the path for the python-elasticsearch module. Muriithi Frederick Muriuki
2018-01-12Add functions to help handle github login...* Add functions to help with the github OAuth2 login process Muriithi Frederick Muriuki
2018-01-12Add elasticsearch_tools module...* Collect variables and functions for using the elasticsearch system in a separate module. Muriithi Frederick Muriuki
2018-01-12Add client_id and client_secret configurations...* Provide the OAuth2 client_id and client_secret values in configuration variables. Muriithi Frederick Muriuki
2018-01-10Add template elements for OAuth login...* Add html elements that will be used to prompt users to login with either GitHub or ORCID. Muriithi Frederick Muriuki
2018-01-10Add configuration variables for external services...* Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. Muriithi Frederick Muriuki
2018-01-04Merge pull request #270 from pjotrp/testing...Merge some older commitszsloan
2017-12-20Added submit_bnw even though it isn't working yet, just so views.py doesn't t...zsloan
2017-12-20Fixed issue that caused Mb ticks to get out of alignment for mapping figurezsloan
2017-12-20Fixed the way PLINK outputs phenotype files (though there's still some proble......Added some code related to new plotly probability plot, though it's commented out until it looks how I want it to Added some code for adding the BNW link to GN2, though it's not working yet Updated dataset menu structure JSON file zsloan
2017-12-20VERSIONPjotr Prins
2017-12-20tools: find path for JS and gemma_wrapperPjotr Prins
2017-12-20Bring in some earlier work - mostly documentation and startup handlingPjotr Prins
2017-12-06Fixed drop-down group orderzsloan
2017-12-04Fixed drop-down scripts to more appropriately deal with BXD300 groups (though......Added some header data to mapping output file Fixed links in Network Group nodes/edges zsloan
2017-11-22Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2017-11-22Added option to export csv of full mapping resultszsloan
2017-11-21Merge pull request #258 from lyan6/master...improved scatter plotszsloan
2017-11-17Fixed issue that caused GEMMA LOCO to not work on productionzsloan
2017-11-06Replaced Histogram and Bar Chart with Plotly version and added new Box Plot w......GEMMA now has option to select genotypes Updated dataset select dropdowns to be ordered correctly Fixed dataset select dropdowns for correlations to not show confidential datasets Added Skewness and Kurtosis to Basic Statistics table Fixed Verify and RNA-seq buttons on trait page Temporarily hardcoded Reference page until we get it to link with database zsloan
2017-10-02Merge branch 'testing' of github.com:genenetwork/genenetwork2Lei Yan
2017-10-02save as svg button workLei Yan
2017-09-22Fixed issue that caused covariates to not work for certain data set groupszsloan
2017-09-22Fixed issue that caused LOCO to not work when remapping or using single chrom...zsloan
2017-09-21LOCO should work with GEMMA (when BIMBAM available), though I still need to d...zsloan
2017-09-14Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2017-09-14Committing current progress towards implementing LOCO for GEMMA, not done yetzsloan
2017-09-14Merge pull request #264 from pjotrp/testing..../bin/genenetwork2: add GEM_PATH for gemma-wrapperzsloan
2017-09-14./bin/genenetwork2: add GEM_PATH for gemma-wrapperPjotr Prins
2017-09-13update Correlation Scatterplot formatLei Yan
2017-09-12Merge branch 'testing' of github.com:genenetwork/genenetwork2Lei Yan
2017-09-12change corr_scatterplot precision formatLei Yan
2017-09-07Updated show trait page to correctly show GEMMA options for certain data setszsloan
2017-09-07Added the script to convert bimbam to kinship matriceszsloan
2017-09-05Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2017-09-05Added file converting genofiles to bimbamzsloan
2017-09-05Merge pull request #259 from pjotrp/testing...gemma-wrapper: find binary in profilezsloan
2017-09-04gemma-wrapper: find binary in profilePjotr Prins
2017-08-29Mostly changes related to getting gemma working with covariates and BIMBAM fi......Other changes include: - Fixing links in the network graph - Changing button colors on show trait page - Changing color scheme for heatmap - Making rows highlight in yellow when clicked on - Some changes to table appearance (like giving gene global search a horizontal scroll) zsloan
2017-08-23Update corr scatterplotLei Yan
2017-08-03remove bracketsLei Yan
2017-08-02Remove duplicate codesLei Yan
2017-08-02Merge branch 'testing' of github.com:genenetwork/genenetwork2Lei Yan
2017-08-02Update Correlation Scatterplot parametersLei Yan
2017-07-06Merge pull request #256 from genenetwork/development...Variety of changeszsloan
2017-07-06Merge branch 'testing' into developmentdevelopmentzsloan
2017-07-06Improved table appearance for global searches...Scatterplot Matrix works again Added the first few changes to get covariates working (not done yet) zsloan
2017-07-03Merge branch 'testing' of github.com:genenetwork/genenetwork2Lei Yan
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