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(though there's still a minor issue with a few datasets)
Added some header data to mapping output file
Fixed links in Network Group nodes/edges
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improved scatter plots
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with Plotly
GEMMA now has option to select genotypes
Updated dataset select dropdowns to be ordered correctly
Fixed dataset select dropdowns for correlations to not show confidential datasets
Added Skewness and Kurtosis to Basic Statistics table
Fixed Verify and RNA-seq buttons on trait page
Temporarily hardcoded Reference page until we get it to link with database
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chromosome view
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do more testing
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./bin/genenetwork2: add GEM_PATH for gemma-wrapper
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gemma-wrapper: find binary in profile
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file format
Other changes include:
- Fixing links in the network graph
- Changing button colors on show trait page
- Changing color scheme for heatmap
- Making rows highlight in yellow when clicked on
- Some changes to table appearance (like giving gene global search a horizontal scroll)
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Variety of changes
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Scatterplot Matrix works again
Added the first few changes to get covariates working (not done yet)
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Correlation Scatterplot updates
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Removed an extraneous character in the gsearch_pheno html
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Removed Download as PNG option for Probability Plot since it also isn't working yet
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with GEMMA where you can't run it simultaneously on two traits from the same group
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Added warning notifying users that file upload option in the submit_trait page doesn't work yet
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Fixed Results table for centimorgan results to display cM instead of Mb
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