genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2015-03-17	Added files for bootstrap icons and scatter-plot css file	Zachary Sloan

2015-03-17	Improved rqtl code	Zachary Sloan

2015-03-17	Moved scatter-plot to the right of options instead of below	Zachary Sloan

2015-03-17	Moved setting of geno variable into non-human	Zachary Sloan

2015-03-12	Combined searches now work for most terms	Zachary Sloan
	Fixed appearance of the scatterplot matrix Changed pylmm code back because of an error after I had switched to Pjotr's code
2015-03-12	Just committing changes to search so I can pull to production branch	Zachary Sloan

2015-03-11	Merged lmm branch	Pjotr Prins

2015-03-11	lmm.py: change message on running from CLI	Pjotr Prins

2015-03-11	& Added testing option, now the results match	Pjotr Prins

2015-03-10	Normalisation	Pjotr Prins

2015-03-10	lmm.py: debugging output	Pjotr Prins

2015-03-10	Missing genotypes and normalize	Pjotr Prins

2015-03-10	Populationg Redis from TSV data	Pjotr Prins

2015-03-10	Refactored tsvreader out	Pjotr Prins

2015-03-10	Factoring out tsvreaders	Pjotr Prins

2015-03-10	convertlmm.py: add SNP names	Pjotr Prins

2015-03-10	Turn HAB encoding into pylmm genotyping	Pjotr Prins

2015-03-09	Add HAB encoding	Pjotr Prins

2015-03-09	Write genotype file non-transposed	Pjotr Prins

2015-03-09	Write genotype file (start)	Pjotr Prins

2015-03-09	Write genotype file (start)	Pjotr Prins

2015-03-09	plink: missing values in bim	Pjotr Prins

2015-03-09	Now we can use print in lamdba	Pjotr Prins

2015-03-09	Not using numpy - is part of the caller	Pjotr Prins

2015-03-09	plink: no need to know the number of SNPs, but you need INDs	Pjotr Prins

2015-03-09	plink support	Pjotr Prins

2015-03-09	convertlmm.py: options.geno	Pjotr Prins

2015-03-09	convertlmm.py: plink support	Pjotr Prins

2015-03-09	Parse new phenotype format	Pjotr Prins

2015-03-09	Parse new phenotype format	Pjotr Prins

2015-03-07	Write phenotypes	Pjotr Prins

2015-03-07	Kinship converter	Pjotr Prins

2015-03-05	Check command	Pjotr Prins

2015-03-05	Kinship 1.0 parser	Pjotr Prins

2015-03-05	Kinship file format support (reader and writer)	Pjotr Prins

2015-03-05	Convert textual kinship file	Pjotr Prins

2015-03-05	Helpers to split out functionality	Pjotr Prins

2015-03-05	Removed execution flag x from files	Pjotr Prins

2015-03-03	fix print	Pjotr Prins

2015-03-01	Warning	Pjotr Prins

2015-03-01	Add warning to running lmm.py from the command line	Pjotr Prins

2015-02-28	Started adaptations for introducing multi-core version	Pjotr Prins

2015-02-20	Splitting out handlers	Pjotr Prins

2015-02-20	Moved pylmm scripts that are not used by GN2	Pjotr Prins

2015-02-20	Remove empty dir	Pjotr Prins

2015-02-20	Split out behaviour for calling lmm from GN2 or (testing) CLI	Pjotr Prins

2015-02-11	Added pop-up for empty searches	Zachary Sloan
	Replaced pyLMM code with one version of Pyotr's updated faster code Began fixing search to work for combined searches Made login screen look better and fixed for empty fields
2015-01-30	Fixed several bugs	Zachary Sloan
	Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem
2014-12-29	Made a bunch of cosmetic changes to various pages and fixed a couple searches	Zachary Sloan

2014-12-12	Added a additive effect column to search result and collection tables	Zachary Sloan
	Fixed the header so that it looks fine when resizing