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2013-10-17Added file for the correlation scatterplot and added the @app...to views.py Added the link to the corr plot page to the correlation page template Lei Yan
2013-10-11Merge /home/sam/geneLei Yan
2013-10-11Small changes around logging inSam
2013-10-10Almost have correlation working for non-primary strain/group...There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work. Lei Yan
2013-10-09Improved some of the code related to the correlation page...For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter Lei Yan
2013-10-08Literature correlation works when it is selected as the sorted...correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense. Lei Yan
2013-10-07Worked on logins, session_ids, flash messages, etc.Sam
2013-10-06Before writing login codeSam
2013-10-03Much more progess on logging in:...* Verifying emails now works * Redid user manager Sam
2013-10-02Half the verification code for email addresses is doneSam
2013-09-27Downloaded the TableTools library so tables can be exported/savedLei Yan
2013-09-27Added trait links to correlation results...Began adding the code that does the initial sort by literature correlation Lei Yan
2013-09-27User registration beginning to work (at least the first stage)Sam
2013-09-27Before fixing an issue in pbkdf2Sam
2013-09-24Did some work towards doing the tissue correlation for all traits...in a dataset (in order to sort by tissue correlation instead of sample correlation). root
2013-09-24before deleting more of the security flask stuffSam
2013-09-20Tissue correlation results work for sample r/rho correlation page...and are written to the template Lei Yan
2013-09-13Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py Lei Yan
2013-09-06Registration form validaiton without js worksSam
2013-09-05Missed some files in last checkin so adding them nowSam
2013-09-05Switched registration form to no longer be modal, but instead it's own page...Added validation of form using parsley.js Added password strength indicator using zxcvbn Sam
2013-09-05Adjusting to using our own registariton packageSam
2013-09-04Trying to trace through filesSam
2013-08-28Various changes to track down what happens with security modulesSam
2013-08-23Finally figured out where to put flask_security into the code...Various registration template changes Sam
2013-08-23Working on user registration and added nginx conf for my branchSam
2013-08-22Added show_trait_js_test to the tests run by test_runner...Fixed the part of show_trait_js_test that checks that the style is "display: none;" Zachary Sloan
2013-08-22Fixed a couple minor thingsZachary Sloan
2013-08-22Fixed import in show_trait_js_test.py...Added a function to browser_run.py that gets an element's style Zachary Sloan
2013-08-21Just changed a comment in the show trait js testZachary Sloan
2013-08-21Fixed an issue where correlationFunction was being imported...instead of its updated name correlation_function Zachary Sloan
2013-08-21Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-21Just removed a couple print statementsZachary Sloan
2013-08-16Created a file (test_runner.py) that runs every test in the...directory in a row and reports the results Zachary Sloan
2013-08-16Merge https://github.com/zsloan/genenetworkZachary Sloan
2013-08-16Removed and imported the Test class from browser_test.py in each...test file Zachary Sloan
2013-08-15Removed the markers with no variance (and thus no p-values) from the...manhattan plot Zachary Sloan
2013-08-14Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-14Made some changes related to getting marker regression working for...some datasets Zachary Sloan
2013-08-14Removed some duplicate files in the maintenance folderZachary Sloan
2013-08-14Merge branch 'master' of https://github.com/zsloan/genenetworkZachary Sloan
2013-08-14Committing browser test filesZachary Sloan
2013-08-13Added several test files and the file with the class that...they import (browser_test.py) Zachary Sloan
2013-08-08First Selenium test addedSam Ockman
2013-08-08Fixed issue where points in marker regression manhattan plot...weren't positioned on the x-axis Zachary Sloan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc Zachary Sloan
2013-08-02Fixed a bug related to groups with genofiles (not sure if it makes sense...for them not to have genofiles yet) Zachary Sloan
2013-07-30Just added some print statements to debug an issue with LMM code...Also added some to notes Zachary Sloan
2013-07-23Fixed a couple issues with he quick_search_table.py script...Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) Zachary Sloan
2013-07-19Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page Zachary Sloan
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