genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-12-07	Changed the logic in create_trait so that permissions should always be set, ↵	zsloan
	and added an assert that 'name' is passed instead of using if/else, since it should always be passed
2020-12-04	Removed some logging statements from gemma_mapping.py	zsloan

2020-12-04	Fixed issue where chromosome names weren't being fetched correctly, causing ↵	zsloan
	an error in GEMMA
2020-12-04	Fixed typo	zsloan

2020-12-04	Gave a margin to the More Options field so it doesn't look bad	zsloan

2020-12-04	Limited the mean to 3 digits on correlation page	zsloan

2020-12-04	Merge pull request #502 from zsloan/bug/fix_correlation_export	zsloan
	Bug/fix correlation export
2020-12-04	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	bug/fix_correlation_export
2020-12-04	Fixed correlation export to export table contents instead of using the same ↵	zsloan
	export as other trait tables (that exports data) Removed some unused imports
2020-12-04	Merge pull request #497 from BonfaceKilz/feature/display-deps-from-guix	BonfaceKilz
	Feature/display deps from guix
2020-12-03	Merge pull request #500 from zsloan/bug/fix_correlation_export	zsloan
	Bug/fix correlation export
2020-12-03	Changed a lot of the logic related to highlighting rows and ↵	zsloan
	disabling/enabling the Add/Copy/Remove buttons to use DataTables API Moved change_buttons where it can be used outside of search_results.js
2020-12-03	Fixed drawCallback for correlation page table and added the Invert button	zsloan

2020-12-03	Fixed drawCallback JS to work correctly and removed change_buttons function ↵	zsloan
	since it's now in search_results.js
2020-12-03	Fixed View Collection table drawCallback to correctly deal with check boxes ↵	zsloan
	and the Copy/Delete buttons and fixed an issue where extra white-space on either side of the checkboxes was causing some JS to not work correctly
2020-12-04	Display d3js chord dependency diagram of gn2 dependenices	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py: Add new bs4 import. (references): Filter out javascript from the guix-generated d3js html file and pass it to the jinja template. * wqflask/wqflask/static/new/css/markdown.css: New styles for the graph content. * wqflask/wqflask/templates/environment.html: New graph content.
2020-12-03	Added Invert button to search result page	zsloan

2020-12-03	Changed invert function to use DataTables API so it can also work with Scroller	zsloan

2020-12-03	Fixed select_all and deselect_all to use DataTables API so they work with ↵	zsloan
	any tables that use Scroller
2020-12-03	Converted the submit_traits_to_export_or_bnw function to using DataTables ↵	zsloan
	API, since the JQuery it was previously using didn't work with Scroller
2020-12-03	Convert trait/dataset names to strings, since phenotype names were being ↵	zsloan
	treated as integers
2020-12-03	Increased correlation table vertical height to 100vh	zsloan

2020-12-03	Center-align the table header and left-align the table body	BonfaceKilz

2020-12-03	Move css from environment.html to markdown.css	BonfaceKilz

2020-12-03	Remove edit button in environments page	BonfaceKilz
	* wqflask/wqflask/templates/environment.html: Delete edit button. The dependency file is autogenerated from guix.
2020-12-02	Missed a syntax typo in last commit	zsloan

2020-12-02	Updated Funding line in search result export	zsloan

2020-12-02	Added trait URLs to search page export	zsloan

2020-12-02	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan

2020-12-02	Added index to search result export	zsloan

2020-12-02	Merge pull request #498 from zsloan/bug/heatmap_fix	zsloan
	Made changes that should fix Heatmap errors + removed a console.log i…
2020-12-02	Made changes that should fix Heatmap errors + removed a console.log in ↵	zsloan
	panelutil.js
2020-12-01	Merge pull request #482 from zsloan/feature/corr_table_changes	zsloan
	Feature/corr table changes
2020-12-01	Merge pull request #490 from zsloan/feature/filter_samples_by_value	zsloan
	Feature/filter samples by value
2020-12-02	Merge pull request #484 from Alexanderlacuna/test-regression	BonfaceKilz
	Add tests for marker_regression
2020-12-01	Fetch file from systempath when loading "/environments" route	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py: (render_markdown): Extend function to check whether "file_name" is to be fetched remotely or locally in syspath. (environments): Extend route to fetch from syspath if dependency file exists there; otherwise fetch remotely from Github as a fallback.
2020-12-01	Add new function to fetch md file from sys paths	BonfaceKilz
	* wqflask/wqflask/markdown_routes.py: New imports. (get_file_from_python_search_path): New function.
2020-12-01	Remove stale comment	BonfaceKilz

2020-11-28	modify test for plink mapping and rqtl_mapping	Alexander Kabui

2020-11-27	move tests to unit folder	Alexander Kabui

2020-11-27	Merge pull request #492 from Alexanderlacuna/feature/add-markdown-pages	BonfaceKilz
	Feature/add markdown pages
2020-11-27	Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵	Alexander Kabui
	test-regression
2020-11-27	edit css for static page	Alexander Kabui

2020-11-27	update to edit text in static templates	Alexander Kabui

2020-11-27	add new github button and css	Alexander Kabui

2020-11-27	add edit image	Alexander Kabui

2020-11-26	Merge pull request #491 from zsloan/feature/manhattan_plot_coloring	zsloan
	Feature/manhattan plot coloring
2020-11-26	Changed the way the chromosome colors for the "color by chr" manhattan plot ↵	zsloan
	option are stored to using a list comprehension on a list of the just the hex strings
2020-11-27	remove commented code	Alexander Kabui

2020-11-26	use css block in templates and remove comments	Alexander Kabui