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2020-10-28A non-string being used as a paramter in HT.Link caused an error after the Py......* wqflask/wqflask/marker_regression/display_mapping_results.py - cast theGO["snpCount"] as a string zsloan
2020-10-27Merge pull request #466 from zsloan/show_trait_attributes_fix...Fix issue where attribute values were displayed in the wrong columnszsloan
2020-10-27Get the "first_attr_start_pos" from a samplelist instead of from each individ......* wqflask/base/webqtlCaseData.py - Removed code getting first_attr_start_pos * wqflask/wqflask/show_trait/SampleList.py - Added code getting first_attr_start_pos and assigning it to all samples + removing one unnecessary sort * wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js - Fixed issue that was causing the N column to not be displayed zsloan
2020-10-27Cast post and pre-publication descriptions into binary...* wqflask/wqflask/gsearch.py (GSearch): There's an exception thrown when the decode method is called on that description string. If the casting is absent, and the decode statements are removed, the some characters get broken. BonfaceKilz
2020-10-27Merge pull request #465 from Alexanderlacuna/test-branch...add test for trait_dataBonfaceKilz
2020-10-27switch from single quote to double quoteAlexanderlacuna
2020-10-27address failuresAlexanderlacuna
2020-10-27added changes to fileAlexanderlacuna
2020-10-27modified to use pep8 standardsAlexanderlacuna
2020-10-27Merge pull request #422 from BonfaceKilz/build/python3-migration...Build/python3 migrationBonfaceKilz
2020-10-26Merge pull request #463 from BonfaceKilz/feature/add-load-metrics-to-footer...Add page load metrics to footerBonfaceKilz
2020-10-26modified test fileAlexanderlacuna
2020-10-26Add page load metrics to footer...* wqflask/wqflask/__init__.py (before_request): New function. Add method for calculating total request_time to global context. * wqflask/wqflask/templates/base.html: - Display total server load time. - Display total page rendering time, and add js functionality to calculate it. BonfaceKilz
2020-10-23Merge pull request #462 from zsloan/fix_export_error...Fixed trait export for situations where there's no authors/title/journalzsloan
2020-10-23Fixed trait export for situations where there's no authors/title/journalzsloan
2020-10-22Merge pull request #460 from zsloan/move_styling_to_css...Move styling to csszsloan
2020-10-22Merge pull request #461 from zsloan/mapping_y_axis_fix...Mapping y axis fixzsloan
2020-10-21Removed code setting the maximum tick value to 1.15* the max LRS/LOD if permu...zsloan
2020-10-21Ensured all Y axis ticks in the mapping figure are below the top of the figur......* wqflask/wqflask/marker_regression/display_mapping_results.py - Set LRS_LOD_Max (the top tick value) as the maximum value between the significant value (if permutations are used) and the max LRS/LOD value; previously it would set it as the significant value * 1.1 if the significant value exists and is higher than the max LRS/LOD value. zsloan
2020-10-20Fixing typo in JS code where "attribute_start_pos" said "attribute_start_post"zsloan
2020-10-20Fixed some problems with the previous attempt at resolving conflicts before m...zsloan
2020-10-20Merge branch 'testing' into move_styling_to_csszsloan
2020-10-20Added classes to replace styling in show_trait_edit_data.html to show_trait.c......* wqflask/wqflask/static/new/css/show_trait.css - Moved show_trait_edit_data.html styling to this file and changes padding for the checkbox table cell to better center it; for some reason text-align: center wasn't working and it specifically needed left-padding * wqflask/wqflask/static/new/javascript/show_trait.js - Replaced underscores with - in class names * wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js - Replaced underscores with - in class names zsloan
2020-10-20Replaced _ with - in class names (though this change will end up being unnece......* wqflask/wqflask/templates/show_trait.html - Replaced underscores with - in class names zsloan
2020-10-20Replaced one class name with a more generic "inline-div" since there are othe...zsloan
2020-10-20Made class names consistently use - instead of _ in show_trait_edit_data.html...* wqflask/wqflask/templates/show_trait_edit_data.html - replaced underscores with - zsloan
2020-10-20Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-10-20Update how pbkdf2.pbkdf2_hex is used when encrypting pass...* wqflask/wqflask/user_login.py (encode_password): - Remove unused local variable "salt". - Pass "hashfunc" as a string. - Apply Pep-8. BonfaceKilz
2020-10-20Add tests for encoding password...* wqflask/tests/wqflask/test_user_login.py: New tests. BonfaceKilz
2020-10-20Update pbkdf2...* wqflask/wqflask/pbkdf2.py: Remove unnecessary pbkdf2 usage docs--- it already exists in python3 stdlib--- and "__main__" section which runs the test. (imports): Delete unused imports. Add safe_str_cmp. (pbkdf2_hex): Use hashlib.pbkdf2_hmac. (safe_str_cmp): Replace with werkzeug.security.safe_str_cmp (test): Delete it. Tests moved to test_pbkdf2.py. BonfaceKilz
2020-10-20Add pbkdf2 tests...* wqflask/tests/wqflask/test_pbkdf2.py: New tests. BonfaceKilz
2020-10-20Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-10-19Merge pull request #442 from zsloan/scroller_testing...Added scroller to trait page and changed sample tables to use itzsloan
2020-10-19Merge branch 'testing' into scroller_testingzsloan
2020-10-19Update snpString link...* wqflask/wqflask/marker_regression/display_mapping_results.py: Replace "%" strings with f-strings. Also, replace old "Href" with new htmlgen "Link" method. BonfaceKilz
2020-10-19Delete stale commentBonfaceKilz
2020-10-15Fixed issue that caused interval map setting to not work correctly for reaper......* wqflask/wqflask/templates/show_trait_mapping_tools.html - Mistakenly reversed true/false in the reaper Interval Map option zsloan
2020-10-15Replaced the styling in show_trait_mapping_tools.html with CSS and changed so......* wqflask/wqflask/marker_regression/run_mapping.py - "manhattan_plot" is now passed as lower-case "true"/"false" to match the case of other boolean options * wqflask/wqflask/static/new/css/show_trait.css - Added classes for the styling in show_trait_mapping_tools.html * wqflask/wqflask/static/new/javascript/get_covariates_from_collection.js - Changed class name "selected_covariates" to "selected-covariates" to match class naming scheme * wqflask/wqflask/static/new/javascript/show_trait.js - Changed class name "selected_covariates" to "selected-covariates" to match class naming scheme * wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js - Changed class names from using underscore to useing "-" to match class naming scheme * wqflask/wqflask/templates/show_trait_mapping_tools.html - Replaced styling with class names and changed some styling to be more simple/consistent zsloan
2020-10-15Put the correlation descriptions inside of a div so that they could have thei...zsloan
2020-10-15Replaced styling from show_trait_transform_and_filter.html with CSS...* wqflask/wqflask/static/new/css/show_trait.css - Added styles for elements in show_trait_transform_and_filter.html * wqflask/wqflask/templates/show_trait_transform_and_filter.html - Replaced styling in template with classes zsloan
2020-10-14Removed some commented out HTMLzsloan
2020-10-14Converted show_trait_calculate_correlations.html to use CSS instead of stylin......* wqflask/wqflask/static/new/css/show_trait.css - Added styling for elements in show_trait_calculate_correlations.html and changed a few existing class names to be more reasonable * wqflask/wqflask/templates/show_trait.html - Changed the class name for the main div * wqflask/wqflask/templates/show_trait_calculate_correlations.html - Substituted direct styling with CSS and changing some styling to make the correlation method descriptions keep a reasonable width and position * wqflask/wqflask/templates/show_trait_statistics.html - Changed some class names to be better zsloan
2020-10-14Changed a couple class names because it's probably dumb to include the pixels......* wqflask/wqflask/static/new/css/show_trait.css - Changed a couple class names * wqflask/wqflask/templates/show_trait_statistics.html - Changed a couple class names zsloan
2020-10-14Moved show_trait_statistics.html styling to show_trait.css and fixed a minor ......* wqflask/wqflask/static/new/css/show_trait.css - Moved styling from show_trait_statistic.html here * wqflask/wqflask/templates/show_trait_statistics.html - Replaced styling with classes, removed some unnecessary/unused styling, and added some missing label text zsloan
2020-10-13Added styling from show_trait_details.html to show_trait.css...* wqflask/wqflask/static/new/css/show_trait.css - Added the bottom margin styling for the div containing the buttons * wqflask/wqflask/templates/show_trait_details.html - Removed some unnecessary styling and moved the styling for .btn_toolbar to show_trait.css zsloan
2020-10-13Changed styling in show_trait.html to use CSS instead...* wqflask/wqflask/static/new/css/main.css - Added CSS for min-height in table cells with checkboxes, since this would apply to all tables throughout the site * wqflask/wqflask/static/new/css/show_trait.css - Added CSS for styling that was previous in show_trait.html * wqflask/wqflask/templates/show_trait.html - Replaced directly styling with classes zsloan
2020-10-13Merge branch 'testing', remote-tracking branch 'origin' into move_styling_to_csszsloan
2020-10-13Merge pull request #456 from zsloan/misc_rob_changes...Some trait page width changeszsloan
2020-10-13Added right-alignment for trait_value_input text fields in sample table to CS...zsloan
2020-10-13Merge pull request #459 from zsloan/table_width_changes...Change some column widths/headers in search and view collection pageszsloan
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