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2021-08-12Account for user selecting one of the two sample groups if more than one existzsloan
2021-08-12Fixed issue where 1 was added to the loop.index instead of subtracted + only ↵zsloan
show the sample group selection if there are more than one sample groups
2021-08-12Add JS for filtering sample table rows by study samplelistzsloan
2021-08-12Get list of study titles to use for the dropdown menu and store the full ↵zsloan
list of study samplelists as a hddn input (don't like this, but no easy alternative right now)
2021-08-12Return empty list instead of None in get_study_samplelistszsloan
2021-08-12Fix the way the study_sample_lists path is set and checkedzsloan
2021-08-12Add option to filter samples by study to templatezsloan
2021-08-12add function for reading in JSON file that lists sample lists unique to each ↵zsloan
study within a group (in this case only BXD Longevity for now)
2021-08-12Get case attribute descriptions from DB and display them as mouseover titles ↵zsloan
in the sample table headers for the trait page
2021-08-11Fixed issue that caused case attribute columns to become unaligned if some ↵zsloan
strains didn't have values for all case attributes + changed ordering to use attribute ID instead of name
2021-08-11Sort by attribute ID instead of name in initialize_show_trait_tables.js when ↵zsloan
defining attribute columns
2021-08-10Fixed the way n_samples is calculated for the loading page and mapping ↵zsloan
figure; previously it would includes parents/f1s
2021-08-10Fixed issue that caused correlations to not work with temp traits after ↵zsloan
switching to using the GN3 code
2021-08-10Replaced forward slashes with underscores in the hashed filenames used by ↵zsloan
GEMMA, since the forward slashes make the paths not work properly
2021-08-09Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-08-09Removed some paths that have been throwing errors in the logs constantlyzsloan
2021-08-06gunicorn production settings: increase process refresh rate to clean up RAM. ↵Pjotr Prins
Also use the jitter switch.
2021-08-05Generate phenotype and covariate filenames for GEMMA from a hash of values ↵zsloan
and dataset name - previously the covariate filename was static and the phenotype filename was just random
2021-08-04wqflask: views: Remove unnecessary casting for "count"BonfaceKilz
Sometimes, the "count" value can be an "x", as opposed to an int. With the cast, an un-handled error could be thrown.
2021-08-04wqflask: views: Replace hard-coded "/tmp" dirBonfaceKilz
2021-08-03Remove hard coded PATH for csvdiff binaryBonfaceKilz
2021-08-03Replace TMPDIR hard-coded val with one set from flaskBonfaceKilz
2021-08-03wqflask: views: Only show user's diffBonfaceKilz
2021-08-03Rename display_files.html -> display_files_admin.htmlBonfaceKilz
2021-08-03Reject diff data on clickBonfaceKilz
2021-08-03Display a flash message after a file(and data) approvalBonfaceKilz
squash! Display a flash message after a file(and data) approval
2021-08-03wqflask: views: After approval, rename the file at the right pointBonfaceKilz
2021-08-03wqflask: views: Rename endpoint to "/admin/data-sample/diffs/"BonfaceKilz
2021-08-03wqflask: views: use dataset_id when inserting into metadata_auditBonfaceKilz
2021-08-03wqflask: views: Add dataset_id to diff json that'll be storedBonfaceKilz
2021-08-03wqflask: views: Add author name to generated diff's filenameBonfaceKilz
2021-08-03templates: display_files: Add a a reject buttonBonfaceKilz
2021-08-03templates: edit_phenotype: Put csv "oownload" button above "Browse"BonfaceKilz
2021-08-03templates: edit_phenotype: Remove link to the approve pageBonfaceKilz
2021-08-03wqflask: views: Flash messages during editsBonfaceKilz
2021-08-03wqflask: views: Get the publishdata_id from the fileBonfaceKilz
2021-08-03wqflask: views: Filter out approved/ rejected files during displayBonfaceKilz
* wqflask/wqflask/views.py (approve_data): Only show files that have not been approved/ rejected.
2021-08-03wqflask: views: Replace `update_raw` with `update_sample_data`BonfaceKilz
2021-08-03templates: edit_phenotype: Add some margin to links for csv downloadBonfaceKilz
2021-08-03templates: edit_phenotype: Properly centre form controlsBonfaceKilz
2021-08-03templates: edit_phenotype: Use proper page header for this pageBonfaceKilz
2021-08-03templates: edit_phenotype: add some form of padding upload buttonBonfaceKilz
2021-08-03edit_phenotype: Remove duplicate htmlBonfaceKilz
2021-08-03templates: edit_phenotype: Add file upload and "approval" buttonsBonfaceKilz
2021-08-03templates: edit_phenotype: Add enctype to form cause of file uploadsBonfaceKilz
2021-08-03wqflask: views: Return the json data for viewingBonfaceKilz
* wqflask/wqflask/views.py (display_file): New function.
2021-08-03wqflask: views: Approve data when the "approve" button is clickedBonfaceKilz
* wqflask/wqflask/views.py (approve_data): New function.
2021-08-03wqflask: views: Show diff files for the adminBonfaceKilz
* wqflask/wqflask/views.py (display_diffs_admin): New function. * wqflask/wqflask/templates/display_files.html: New template to show the diffs.
2021-08-03wqflask: views: Process file_csv if provided and get the diffBonfaceKilz
* wqflask/wqflask/views.py (update_phenotype): If a file is provided in the request, get the diff and store it in a data escrow.
2021-08-03wqflask: views: Remove un-necessary comment "#" sequenceBonfaceKilz
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