Age | Commit message (Expand) | Author |
2018-03-29 | Can now add markers to collection from mapping results page | zsloan |
2018-03-29 | Resolved conflict in views.py | zsloan |
2018-03-29 | Fixed box plots and got them to update with changed sample data...Removed fast correlation option because it doesn't work well with gunicorn
Changed the type of logger from error to debug when logging which page is being visited in views.py
| zsloan |
2018-03-29 | Merge pull request #297 from pjotrp/testing...Testing | zsloan |
2018-03-29 | Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295 | Pjotr Prins |
2018-03-29 | Type checking in its own file | Pjotr Prins |
2018-03-29 | Search: improved regex and some debug info | Pjotr Prins |
2018-03-29 | Disable caching of search errors | Pjotr Prins |
2018-03-29 | Checking search error terms with regex | Pjotr Prins |
2018-03-29 | Illegal search term corrected treatment and no longer shows as error in logs | Pjotr Prins |
2018-03-26 | Remove flask_security module - not used | Pjotr Prins |
2018-03-26 | Fix conflict | Pjotr Prins |
2018-03-26 | Use logger.info instead of logger.debug, fixes https://github.com/genenetwork... | Pjotr Prins |
2018-03-26 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins |
2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins |
2018-03-26 | Fix | Pjotr Prins |
2018-03-26 | Authentication: some mods around defaults | Pjotr Prins |
2018-03-26 | RELEASENOTES | Pjotr Prins |
2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS
| Pjotr Prins |
2018-03-26 | Initialise mapping tests...* Add mapping tests, and build the first of the tests.
| Muriithi Frederick Muriuki |
2018-03-26 | Move import to the top of the page....* Mainly to tell the dependencies easily.
| Muriithi Frederick Muriuki |
2018-03-26 | Check that key exists before using it...* Ensure the key exists in the json object/dictionary, before trying to
use it to retrieve a value.
| Muriithi Frederick Muriuki |
2018-03-26 | Add tests for main web functionality | Muriithi Frederick Muriuki |
2018-03-26 | Add tests to check links. | Muriithi Frederick Muriuki |
2018-03-26 | Add link_checker module...* Add the module that will hold the code to test the links on the
system.
| Muriithi Frederick Muriuki |
2018-03-26 | Use argparse to handle arguments...* Use argparse to handle commandline arguments.
* Create initial layout of how the code might end up - lots of the code
is currently commented out.
| Muriithi Frederick Muriuki |
2018-03-26 | Add tests to check that the UI is setup correctly...* Check that the links for OAuth2 logins via ORCID and GitHub are setup
correctly.
| Muriithi Frederick Muriuki |
2018-03-26 | Provide connections to elasticsearch...* Provide connections to elasticsearch at various points in the code.
These oversight was caught while running tests.
| Muriithi Frederick Muriuki |
2018-03-26 | Add new tests for orcid logins | Muriithi Frederick Muriuki |
2018-03-26 | Add new test for github logins | Muriithi Frederick Muriuki |
2018-03-26 | Remove failing code...* With the parameterized module, the testcase cannot be run
independently at this time.
| Muriithi Frederick Muriuki |
2018-03-26 | Simplify test. Check for content, rather than url...* The test functions were very similar, so this commit refactors out the
common test code to a single method, and passes in the data to the
test using the parameterized package.
* Check that the page content after a login attempt is the expected
content, rather than checking the url.
| Muriithi Frederick Muriuki |
2018-03-26 | Fix assumption of existing collection...* When logging in, if a user selects "Import existing collections", the
system would throw an exception, since Redis would return a NoneType,
which would then be accessed by json.loads(), which doesn't seem to
know how to process that.
This fixes that, by providing a string representing an empty json
array ("[]"), in place of the NoneType.
| Muriithi Frederick Muriuki |
2018-03-26 | Add more login tests. | Muriithi Frederick Muriuki |
2018-03-26 | Add a runner for all integration tests. | Muriithi Frederick Muriuki |
2018-03-26 | Add test for local login...* Add an integration test to test that the login process for users
registered locally to genenetwork2 works as expected.
| Muriithi Frederick Muriuki |
2018-03-26 | Create parametrized superclass for tests...* Since the tests require that some parameters be provided while running
the tests, create a class that helps abstract away the details of
retrieving and setting the expected parameters.
| Muriithi Frederick Muriuki |
2018-03-26 | Rename file and move common code...* Rename the file to make it an importable module
* Refactor the test to move common code out to a super class.
| Muriithi Frederick Muriuki |
2018-03-26 | Add registration test...* Add integration test to check the registration process.
| Muriithi Frederick Muriuki |
2018-03-26 | Requests added | Pjotr Prins |
2018-03-26 | Added unittest example | Pjotr Prins |
2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build.
| Pjotr Prins |
2018-03-26 | Add tests for Registration process. | Muriithi Frederick Muriuki |
2018-03-26 | Update module to make it more testable...* Update functions to make them more testable.
* Update code using updated functions.
| Muriithi Frederick Muriuki |
2018-03-26 | Check elasticsearch at point of use...* Instead of checking for the state of elasticsearch at startup, check
the state at the moment the user requests a feature that depends on
elasticsearch.
This reduces the chances that the user is dropped onto an exception
page when elasticsearch server goes down.
| Muriithi Frederick Muriuki |
2018-03-26 | Add check for elasticsearch...* Add some extra checks to ensure that elasticsearch is running before
presenting the UI to the user.
| Muriithi Frederick Muriuki |
2018-03-26 | Add code to allow user to change password...* After the email is sent to the user, there is need to provide a way
for the user to actually change their password, and have the results
saved.
| Muriithi Frederick Muriuki |
2018-03-26 | Refactor common items to more generic methods....* Refactor code that can be used in more than one place to a more
generic method/function that's called by other methods
| Muriithi Frederick Muriuki |
2018-03-26 | Send emails for forgotten passwords...* Update the code so that it sends out emails for the "forgot password"
feature.
| Muriithi Frederick Muriuki |
2018-03-26 | Add SMTP configuration variables...* Add configuration variables to enable the system connect to the
configured SMTP server to send out emails.
| Muriithi Frederick Muriuki |