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2015-06-05Added back in some of the options on the trait page; Add, Find, and Verify ↵zsloan
now work. I'll get the other 4 working next.
2015-06-04Fixed a minor issue that was causing position search to not work.zsloan
2015-06-02Wildcards can now be appended to mRNA assay searches, but isn't working ↵zsloan
correctly yet with phenotypes
2015-06-02Added Panduka's Genotation tool link to the trait page, along with the Gene, ↵zsloan
OMIM, and GenBank links
2015-06-02Wildcard search should now work for Genotype searcheszsloan
2015-06-02Wildcard search (*) works for regular mRNA assay and phenotype searches and ↵zsloan
fixed issue with black columns in correlation page
2015-05-26Merge pull request #60 from lomereiter/ppzsloan
add missing file
2015-05-26add missing fileArtem Tarasov
2015-05-26Merge pull request #58 from lomereiter/ppzsloan
Use NVD3 for bar chart and probability plot
2015-05-26fix terminologyArtem Tarasov
2015-05-26use NVD3 for bar chartsArtem Tarasov
added informative tooltips and error bars
2015-05-23pp group selectionArtem Tarasov
2015-05-23fix group selection in blocking by indexArtem Tarasov
2015-05-23Fix trait groupingArtem Tarasov
2015-05-23new probability plot (using NVD3 library)Artem Tarasov
* z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results
2015-05-22Fixed issue where correlation didn't work for human traits (and probably ↵zsloan
some others)
2015-05-21Changed the digits for additive effect and megabases in the search results tablezsloan
2015-05-20Merge pull request #53 from lomereiter/bar_chart_improvementszsloan
Bar chart improvements
2015-05-20revert database.py setupArtem Tarasov
2015-05-20bar charts polishedArtem Tarasov
* fixed bar chart width (two bars were invisible) * disabled basic stats update effects, if they are not visible * fix: unchecked samples were shown in charts (because attr('checked') was used instead of prop('checked')) * bar chart gets redrawn after checkbox changes * edit_data_change is also called when clicking buttons from the 'Block samples' panel * better bar chart transitions (use sample name as d3 key function)
2015-05-19Fixed an issue causing position search to not work in a combined search.zsloan
2015-05-19Fixed an issue that caused combined search to not workzsloan
2015-05-20improved legendArtem Tarasov
Now the legend is always positioned on top, so that no overlapping with the plot occurs and it's always visible. The legend is now composed of spans, not an SVG anymore. Also increased the legend font size to 20px.
2015-05-19Regular LRS searches and p-value searches now work.zsloan
2015-05-18Merge pull request #51 from lomereiter/upstreamzsloan
fix broken trait page
2015-05-18fix attribute coloringArtem Tarasov
also I found out that there are two legends shown simultaneously, but one is suitable only for discrete values, and the other for continuous; now only the suitable one is shown
2015-05-18Merge branch 'upstream' of github.com:lomereiter/genenetwork2 into issue28Artem Tarasov
2015-05-18fix broken trait pageArtem Tarasov
2015-05-15Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-05-15Position search now works for mRNA assay and genotype data setszsloan
2015-05-15Merge pull request #49 from lomereiter/case_attributeszsloan
Reduce number of queries for getting case attributes
2015-05-15reduce number of queriesArtem Tarasov
2015-05-15wipArtem Tarasov
2015-05-13Fixed issue where you could change the Make Default button's textzsloan
2015-05-13Fixed sorting on the trait page so that x values always appear at the bottomzsloan
2015-05-13Improved sorting for columns with N/A or missing valueszsloan
2015-05-13Merge pull request #39 from pjotrp/masterzsloan
Refactoring finding tools such as pylmm
2015-05-13Merge pull request #40 from lomereiter/trait_page_querieszsloan
Speedup trait page generation
2015-05-13comment out sql query loggingArtem Tarasov
2015-05-13combine three similar queries into oneArtem Tarasov
2015-05-13replace multiple tissue queries with a single oneArtem Tarasov
2015-05-13cache datasets for each groupArtem Tarasov
2015-05-12Updated pylmm path in INSTALL docpjotrp
2015-05-12Merge branch 'master' of github.com:pjotrp/genenetwork2pjotrp
2015-05-12Add info to warningpjotrp
2015-05-12Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-05-12Remove app linepjotrp
2015-05-12More elaborate handling of finding pylmmPjotr Prins
2015-05-12Move path search into tools.pypjotrp
2015-05-12Merge branch 'master' of https://github.com/zsloan/genenetwork2pjotrp