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2019-08-07Added Christian's genome browser, but still need to clean things up a bunch ↵zsloan
since now it has to create two separate marker lists
2019-08-07Fixed issue with non-LOCO GEMMA mappingzsloan
2019-08-07Changed rn3 to rn6 for a couple external links on the trait pagezsloan
Made some text bold on trait page details
2019-08-02Updated phenogen link in mapping resultszsloan
2019-08-02Fixed issue that caused heatmap to not workzsloan
2019-08-02Fixed issue where zooming into chromosomes or range didn't work with reaperzsloan
2019-08-02Fixed issue where resizing correlation page could make buttons get pushed downzsloan
2019-08-02Added the gif for the loading screenzsloan
2019-08-01Updated aliases to get all species aliases and remove duplicateszsloan
2019-08-01Added wikidata aliaseszsloan
Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details
2019-08-01Replaced loading bar with a gif that should work in Safarizsloan
2019-08-01Made some more aesthetic changes to various pages and charts/figureszsloan
Added some information to the mapping loading page
2019-07-31Fixed header to not have a fixed width, and added min-widths to many pages ↵zsloan
to avoid them ever looking strange when the window's width is lowered Significnatly improved correlation matrix output Fixed issue where zooming into Mb ranges with GEMMA mapping output often showed no results; this fix is not ideal and is just a way to work around the results currently not being sorted correctly. Later I should fix the sorting
2019-07-30Fixed correlation matrix width, colors, and paddingzsloan
2019-07-29Fixed minor issue with previous commitzsloan
2019-07-29Forgot to remove an unused importzsloan
2019-07-29Added Christian's RUST qtlreaper as an optionzsloan
2019-07-26Fixed the intercept line and added information to top of figurezsloan
2019-07-26Scatterplots should have consistent decimal places for axes nowzsloan
2019-07-23Added change to automatically update datasets list using rest api instead of ↵zsloan
json file Removed option to edit certain html pages, like news, policies, etc
2019-07-19Fixed issue where chr in lower case didn't work for LRS term searchzsloan
2019-07-18Made change that should fix encoding issue, fingers crossedzsloan
2019-07-17Hopefully fixed the issue with weird characters in search result descriptionszsloan
2019-07-17Error page should now correctly appear when doing LOCO mapping with GEMMA ↵zsloan
(if there's no appropriate genotype file)
2019-07-15Fixed issue where qnorm values were wrongzsloan
Fixed issue where traits couldn't be highlighted or added to a collection from global search results Fixed issue where third party links threw an error for some traits on the trait page Fixed issue where clicking a row's link unhighlighted it
2019-07-06Fixed issue where spaces were inserted into descriptions for mRNA expression ↵zsloan
data in the regular search Created default collection name when the user submits a collection without naming it
2019-07-03Fixed bug for creating one of the third party links on the trait pagezsloan
Changed text in several pages (submit trait, mapping error) Changed header menu structure some
2019-07-01azsloan
2019-06-30Made external links on trait page open new tab/windowzsloan
2019-06-28Added regression lines to correlation scatterplotszsloan
Fixed bug when doing correlations of non-phenotype traits against phenotype datasets Changed color of manhattan plot points (subject to change)
2019-06-25Added dropdown generation to REST API and switched to using it to generate ↵zsloan
the main search page dropdown
2019-06-24Fixed issue that caused search result pages to not work in IEzsloan
2019-06-24Fixed issue that caused API genotypes query to not work when no limit_to setzsloan
2019-06-24Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should ↵zsloan
work for that now) Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text
2019-06-18Fixed issue with sorting involving 0's on trait pagezsloan
Fixed links to dataset info pages in search results and correlation results pages
2019-06-18Changed the text displayed on search results pagezsloan
Added some links to index page Removed footer from search results page
2019-06-18Phenotype results with long descriptions/authors look much better now + ↵zsloan
added some links to index page
2019-06-14Added some metadata to top of global search resultszsloan
2019-06-12Fixed error when zooming in on chromosome for rat mapping resultszsloan
2019-06-09Had an extra parenthesis to removezsloan
2019-06-09Issue with encoding should be fixed for both global searches nowzsloan
2019-06-09Fixed javascript error with phenotype global searchzsloan
2019-06-09Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵zsloan
for generating genotype object) Fixed issue that caused *all* collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added)
2019-06-09Added fix for error when records don't have mean expression in global searchzsloan
2019-06-07Global search and correlation results can handle null expression nowzsloan
2019-06-06Made some changes to REST API, including adding limit_to option to mappingzsloan
2019-06-06Replaced ISNULL with IFNULL (which is the correct version for MySQL)zsloan
Changed the query form for getting a species' groups
2019-06-05Ensured that a string is returned for SQL fields that can potentially be nullzsloan
2019-06-05Needed to replace single quotes with double quotes for JSON outputzsloan
2019-06-05Additive effects now display for manhattan plots when availablePjotr Prins
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