genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2015-03-09	Not using numpy - is part of the caller	Pjotr Prins

2015-03-09	plink: no need to know the number of SNPs, but you need INDs	Pjotr Prins

2015-03-09	plink support	Pjotr Prins

2015-03-09	convertlmm.py: options.geno	Pjotr Prins

2015-03-09	convertlmm.py: plink support	Pjotr Prins

2015-03-09	Parse new phenotype format	Pjotr Prins

2015-03-09	Parse new phenotype format	Pjotr Prins

2015-03-07	Write phenotypes	Pjotr Prins

2015-03-07	Kinship converter	Pjotr Prins

2015-03-05	Kinship file format support (reader and writer)	Pjotr Prins

2015-03-05	Convert textual kinship file	Pjotr Prins

2015-03-05	Helpers to split out functionality	Pjotr Prins

2015-03-05	Removed execution flag x from files	Pjotr Prins

2015-03-03	fix print	Pjotr Prins

2015-03-01	Warning	Pjotr Prins

2015-03-01	Add warning to running lmm.py from the command line	Pjotr Prins

2015-02-28	Started adaptations for introducing multi-core version	Pjotr Prins

2015-02-20	Splitting out handlers	Pjotr Prins

2015-02-20	Moved pylmm scripts that are not used by GN2	Pjotr Prins

2015-02-20	Remove empty dir	Pjotr Prins

2015-02-20	Split out behaviour for calling lmm from GN2 or (testing) CLI	Pjotr Prins

2015-02-11	Added pop-up for empty searches	Zachary Sloan
	Replaced pyLMM code with one version of Pyotr's updated faster code Began fixing search to work for combined searches Made login screen look better and fixed for empty fields
2015-01-30	Fixed several bugs	Zachary Sloan
	Added legend to bar chart color by trait function Added scatterplot matrix figure Fixed database timeout problem
2014-12-29	Made a bunch of cosmetic changes to various pages and fixed a couple searches	Zachary Sloan

2014-12-12	Added a additive effect column to search result and collection tables	Zachary Sloan
	Fixed the header so that it looks fine when resizing
2014-12-11	Fixed some weirdness with the navbar and jumbotron and aligned everything	Zachary Sloan
	to the left
2014-12-04	Merge /home/gn2/gene	Zachary Sloan

2014-12-04	Added some pages for anonymous collections	Zachary Sloan

2014-12-04	Committing changes to css that change header color	Zachary Sloan

2014-12-01	Merge /home/lei/gene	Zachary Sloan

2014-12-01	Changed header appearances	Zachary Sloan
	Partially implemented PCA feature to correlation matrix page
2014-12-01	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-11-17	Merge /home/zas1024/gene	Zachary Sloan

2014-11-17	Just more changes converting to bootstrap 3	Zachary Sloan

2014-11-06	Merge /home/zas1024/gene	Zachary Sloan

2014-11-06	Upgraded to bootstrap 3 and updated a lot of html to reflect this	Zachary Sloan

2014-11-05	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-11-04	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-10-29	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-10-29	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-10-29	Merge /home/gn2/gene	Lei Yan

2014-10-24	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-10-24	Committer: Lei Yan <lei@penguin.uthsc.edu>	Lei Yan
	On branch master
2014-10-17	Merge /home/zas1024/gene	Zachary Sloan

2014-10-17	Added reference, policies, and links pages	Zachary Sloan
	Improved the appearance of the header menu and "title bar"
2014-10-09	Merge /home/zas1024/gene	Zachary Sloan

2014-10-09	Added config file	Zachary Sloan

2014-10-09	Fixed error with loading the trait page for phenotype traits	Zachary Sloan

2014-10-02	Fixed an error when there's no locus for mRNA expression traits	Zachary Sloan

2014-09-29	Found the problem that was causing several collections functions to not work	Zachary Sloan
	and fixed it