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2016-03-23You can now select chromosome and an Mb range from the top menu and remap...The track in the single chromosome view to zoom into smaller intervals now works correctly again zsloan
2016-03-23Fixed GN1 mapping plots so that Y axis and the Y coordinates of manhattan plo......Table filters markers so it can always be displayed now (previously was too large for GEMMA) zsloan
2016-03-21Manhattan plot option now works for GN1 map, and GEMMA is set to display as m...zsloan
2016-03-21Changed code parsing marker csv file to increase GEMMA speed...Currently commenting out the vector map/table for GEMMA since they cause the page to hang, I'll try to figure out a way to prevent this zsloan
2016-03-18Forgot to not retrieve sample data for the phenotype global search with the l...zsloan
2016-03-18Merge branch 'development' of github.com:genenetwork/genenetwork2zsloan
2016-03-18Replaced header with other information in qtl map...Began adding menu to qtl map Fixed global search to not retrieve samples (to increase speed) Got the vector plot working again so it can be displayed alongside the gn1-style plot Only display the vector plot when doing GEMMA to speed up (this might not be necessary) zsloan
2016-03-17Fixed a bunch of geno files that had most of their contents removed for some ...zsloan
2016-03-15Merge branch 'development' of github.com:genenetwork/genenetwork2zsloan
2016-03-15Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2016-03-15Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-03-15Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-15Fixed the mapping figure track that lets you zoom into a smaller range...Fixed the third party mapping figure tracks to refer to the correct chromosome (before it was always 1) zsloan
2016-03-15Added mapping output file directory to gitignorezsloan
2016-03-14Changed the way headers look across all pages...Changed the way details are displayed in show trait page Changed search query so that it orders results by symbol zsloan
2016-03-03Fixed issue where correlation would do mapping if run after mappingzsloan
2016-03-03Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-03-03Fixed trait export to include SE valueszsloan
2016-03-03Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-03Update gsearch.pyLei Yan
2016-03-02Increased gsearch speed by removing unnecessary query for sample data...Still slower than preferable due to having to query the gn1 database for every trait in the search results zsloan
2016-03-01Merge branch 'master' of https://github.com/genenetwork/genenetwork2zsloan
2016-03-01Committing change to dataset menu before pullzsloan
2016-03-01Fixed csv download and removed non-working "Download Table" button for collec......Not sure what the best way to determine the filename is, so just using "search_results" or "collection_list" for now In future I want to replace the default csv download button by attaching its function to the previous "Download Table" button zsloan
2016-02-26PLINK should not run correctly and graph using GN1 image...Updated dataset menu structure json Increased the width for the label and text field for inputting MAF for PLINK and GEMMA zsloan
2016-02-25fixed untracked fileszsloan
2016-02-24GEMMA mostly working with gn1 mapping, though there may be some issue with th...zsloan
2016-02-18Edited gen_select_dataset to remove confidential datasets...Also hard-coded the removal of Macaque Monkey since I couldn't think of a good way to retroactively check if every dataset in a species is confidential zsloan
2016-02-15Fixed R/qtl mapping so the group (BXD, etc) isn't hardcoded...Removed an extraneous </td> tag from the show trait page zsloan
2016-02-11Updated jquery validation plugin, now works in IE...Fixed a couple minor html syntax erors in login_user.html and base.html Changed export button on correlation page to csvHtml5, but still has problem with commas in fields being interpreted as a new column zsloan
2016-02-08Fixed the logic if how the correlation page applies filters (mean expression,......Added back some colorbox directories that we apparently need (I had removed them in an earlier commit) zsloan
2016-02-08Merge branch 'master' of github.com:genenetwork/genenetwork2 into development...Conflicts: .gitignore zsloan
2016-02-08Guix: installation notespjotrp
2016-02-08Renamed misc dir to docpjotrp
2016-02-08Removing LFSpjotrp
2016-02-08gitignore: resolved conflictpjotrp
2016-02-08Merge branch 'master' of github.com:genenetwork/genenetwork2 into gn-masterpjotrp
2016-02-04Most importantly, this commit fixes an issue that caused the trait page to no......An Intro section is also added to the header, though for the time being its contents aren't populated and the edit option isn't working zsloan
2016-01-29Info button should now work for phenotype and genotype datasetszsloan
2016-01-27Merge branch 'master' of github.com:genenetwork/genenetwork2 into developmentzsloan
2016-01-27Added info button to Dataset dropdown on index page...Fixed script that generates dataset dropdown json file to include accession id Fixed dataset link on search results page zsloan
2016-01-26Removed a bunch of files/directories/packages that are no longer used and som...zsloan
2016-01-21MANIFEST: Ignore output datapjotrp
2016-01-21Adding html+js+css+img files into MANIFESTpjotrp
2016-01-19Adding Python setup.py supportpjotrp
2016-01-15Cofactor now works with reaperzsloan
2016-01-14Regular and single chr views work for qtl reaper now...Single chr now works for R/qtl (didn't before) Merged qtl reaper code into marker_regression.py zsloan
2016-01-12Mapping works for rqtl and centimorgan scalezsloan
2016-01-06Single chromosome view now works for mapping page using GN1's image code...Removed loading bar that appeared on show trait page since it didn't work with GN1 mapping (which opens in a new page) zsloan
2016-01-04Added headers/foots/css to mapping page...Mapping results table now works zsloan
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