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Author
2021-05-27
Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses
zsloan
2021-05-27
Make all attribute names lowercase to deal with situations where sometimes th...
zsloan
2021-05-27
Add code writing perm_strata to phenotype input file in rqtl_mapping.py + fix...
zsloan
2021-05-26
doc: docker-container: Rename python3-genenetwork2 to genenetwork2
...
See: https://is.gd/gHJvhe
BonfaceKilz
2021-05-26
workflows: main: Use "bonfacekilz/genenetwork2:latest" docker image
BonfaceKilz
2021-05-26
wqflask: views: Update comment when data is edited
...
For now the exact column that's edited isn't tracked.
BonfaceKilz
2021-05-26
wqflask: views: Import "fetchone" & "update" from "gn3.db"
BonfaceKilz
2021-05-26
Use @admin_login_required to only enable Rob to do edits to traits
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* wqflask/wqflask/decorators.py (admin_login_required): New decorator. * wqflask/wqflask/views.py (edit_trait): Use admin_login_required decorator.
BonfaceKilz
2021-05-26
wqflask: views: Add method that updates the trait
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* wqflask/wqflask/views.py (update_trait): New function.
BonfaceKilz
2021-05-26
templates: edit_trait: Submit publish_xref data
BonfaceKilz
2021-05-26
wqflask: views: Remove unused imports
BonfaceKilz
2021-05-26
wqflask: views: Make imports top-level
BonfaceKilz
2021-05-26
templates: edit_trait: Make form functional(add ability to submit)
BonfaceKilz
2021-05-26
wqflask: views: Add edit_trait page
...
Should add some some authentication logic to this later since it's not supposed to be accessible to everyone.
BonfaceKilz
2021-05-26
templates: edit_trait: Update edit btn to point to editing endpoint
BonfaceKilz
2021-05-26
wqflask: views: Add extra endpoint to display individual trait edit
...
* wqflask/wqflask/views.py (show_edit_trait_page): New function/ end-point.
BonfaceKilz
2021-05-26
templates: show_trait_details: Add an "[edit]" button
BonfaceKilz
2021-05-26
tests: test_gen_menu: Remove get_species
BonfaceKilz
2021-05-26
api: gen_menu: Replace get_species with get_all_species from gn3
...
* wqflask/wqflask/api/gen_menu.py (gen_dropdown_json): Use new `get_all_species` function. (get_species): Remove it.
BonfaceKilz
2021-05-26
db: webqtlDatabaseFunction: Remove comment
BonfaceKilz
2021-05-26
db: webqtlDatabaseFunction: Remove logger info
BonfaceKilz
2021-05-26
wqflask: database: Replace one-line function with it's body
...
* wqflask/wqflask/database.py (init_db): Remove it.
BonfaceKilz
2021-05-26
templates: edit_trait: Add form for editing a dataset (WIP)
BonfaceKilz
2021-05-25
Fixed/shortened get_categorical_variables function and correctly pass them to...
zsloan
2021-05-25
Removed code that processes output files, since this functionality is moved t...
zsloan
2021-05-22
Fixed the mocked return_value for requests.post to fix broken test
zsloan
2021-05-22
Fixed a couple broken tests
zsloan
2021-05-22
Rewrote test_rqtl_mapping.py, though haven't done tests for all functions yet
zsloan
2021-05-21
Removed a couple unused parameters for run_rqtl
zsloan
2021-05-21
run_rqtl now reads in permutation output
zsloan
2021-05-21
locustfile: Add new load test for a simple test-case
...
Load test fetching a single trait using Locust.
BonfaceKilz
2021-05-20
Re-implemented R/qtl to get the results from the GN3 API
zsloan
2021-05-18
Last commit failed to correctly change Y-axis position; this should fix that
zsloan
2021-05-18
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
zsloan
2021-05-18
Fixed issue that caused the sample values in the Haplotype Analyst to be off ...
zsloan
2021-05-17
handle None for tissue input data
Alexander Kabui
2021-05-14
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
zsloan
2021-05-14
Changed logic in SampleList to set num_cases_exists to False if all existing ...
zsloan
2021-05-14
Changed logic in has_num_cases to ignore N=1
zsloan
2021-05-13
pep8 formatting & delete comments
Alexander Kabui
2021-05-13
integrate comute corr for top results in ui
Alexander Kabui
2021-05-13
add dataset and trait-name in ui template
Alexander Kabui
2021-05-13
Fix load_phenotypes to run with GN2 latest
Arthur Centeno
2021-05-12
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing
zsloan
2021-05-12
Remove maxlength from value/SE input fields and base the width off of the max...
zsloan
2021-05-12
Get max digits for each sample group's vals and create a function for getting...
zsloan
2021-05-11
workflows: main.yml: Remove mysql service and update gn2 b/g task
BonfaceKilz
2021-05-11
workflows: main.yml: Use mariadb as a service
BonfaceKilz
2021-05-11
workflows: main.yml: Set up gn2 before running the unit tests
BonfaceKilz
2021-05-11
workflows: main.yml: Use screen to run gn2
BonfaceKilz
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