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2021-09-28Merge branch 'feature/add_rqtl_pairscan' of github.com:zsloan/genenetwork2 in...zsloan
2021-09-28Added table for pair scan results to templatezsloan
2021-08-27Fix pair_scan button to not submit twicezsloan
2021-08-26Fixed pair_scan to pairscan since that's what the parameter is when passed to...zsloan
2021-08-26Add pair_scan default value to hddn params in show_trait.pyzsloan
2021-08-26Only store js_data if not using pair_scan (which doesn't need it) + remove un...zsloan
2021-08-26Set pair_scan to true when pair_scan is usedzsloan
2021-08-26Changed the pair-scan template to work with the R/qtl pair-scan results and d...zsloan
2021-08-26Fixed bug caused by pair_scan not always being set to a defaultzsloan
2021-08-26Store figure and table data for pair_scan in run_mapping.pyzsloan
2021-08-26Added pair_scan parameter to rqtl_mapping.run_rqtl and fixed setting mapmetho...zsloan
2021-08-26Added defaults for mapmethod_rqtl and mapmodel_rqtl to show_trait.pyzsloan
2021-08-26Changed mapmethod/mapmodel variables names in mapping_results_page (the way t...zsloan
2021-08-26Fixed mapmethod/mapmodel variables names in mapping_input_listzsloan
2021-08-26Fixed some issues with the Pair Scan options and JSzsloan
2021-08-26Added JS for submitting pair scan from trait pagezsloan
2021-08-26Added Pair Scan options to the Mapping Tools tab in the trait pagezsloan
2021-08-26Added check for pair_scan in start_varszsloan
2021-08-25Fix issue where correlation results weren't included parents/f1szsloan
2021-08-25Fixed issue in get_diff_of_vals that caused the diff to be calculated wrong (...zsloan
2021-08-25Add map scale option that was missing for groups with only a single genotype ...zsloan
2021-08-25Fix issue that could cause an error when doing cM mappingzsloan
2021-08-25Fix issue that could cause mapping_scale to not be set correctly in show_trai...zsloan
2021-08-24README: on installing GN2Pjotr Prins
2021-08-24README: minor editsPjotr Prins
2021-08-24README: install with guix profilePjotr Prins
2021-08-23Merge pull request #599 from zsloan/bug/fix_mapping_recompute_issuezsloan
2021-08-23Removed unused variable from list of 'wanted' variables for mappingzsloan
2021-08-23Fixed issue with the way categorical_vars and perm_strata were being passed t...zsloan
2021-08-23Account for situations where the minimum permutation value is also above webq...zsloan
2021-08-23Fix get_perm_strata to usethe Ids for case attributes instead of names + allo...zsloan
2021-08-23Fix the way categorical_var_list is set to account for case attribute Ids bei...zsloan
2021-08-23Include categorical_vars in mapping_results.html so they're included when rec...zsloan
2021-08-23For some reason sample_data was being set twice, and the second time used a t...zsloan
2021-08-20Fixed some logic in trait.py that could cause a problem if a dataset_name was...zsloan
2021-08-20Fix issue where attempting to get the diff of vals for Temp traits was causin...zsloan
2021-08-20startup_config.py: Add DebugToobarExtension for wsgi DEBUG modeBonfaceKilz
2021-08-19Change color for Submit button when selecting covariates + move Back button t...zsloan
2021-08-19Fixed R/qtl 'select covariates' buttons to be the same as the changed ones fo...zsloan
2021-08-19Fixed issue in JS that caused filter_by_value to not work for case attributeszsloan
2021-08-19Fixed the way the drop-down for Filter by Value set values for the case attri...zsloan
2021-08-19Added type='button' to the mapping compute buttons in order to prevent them f...zsloan
2021-08-19Add hash of vals and diff of vals to template_vars passed to loading page in ...zsloan
2021-08-19Fix issues caused by the attribute keys being ids instead of names + fix issu...zsloan
2021-08-19Exclude attributes with only one distinct value as wellzsloan
2021-08-19Removed some unnecessary empty lines from loading.html JSzsloan
2021-08-19Added function for getting the diff of sample values before and after user ch...zsloan
2021-08-19Added hash of sample values and table of changed values to the loading pagezsloan
2021-08-19Added option to make collection default in the colorbox pop-upzsloan
2021-08-19Shorten 'Add to existing collection' button to 'Add'zsloan
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