| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-11-03 | Add basic tests for rendering_markdown...* wqflask/tests/unit/wqflask/test_markdown_routes.py: New tests. | BonfaceKilz |
| 2020-11-03 | Add basic structure for "/glossary" routes test | BonfaceKilz |
| 2020-11-03 | Move logic for fetching md files to it's own function...* wqflask/wqflask/markdown_routes.py (render_markdown): New function. (glossary): use render_markdown function. | BonfaceKilz |
| 2020-11-03 | Use python3-genenetwork2 on commit bdce85d in container...* .github/workflows/main.yml: Update gn2 container. | BonfaceKilz |
| 2020-11-03 | Add simple md content in glossary.md | BonfaceKilz |
| 2020-11-03 | Update glossary template with markdown content | BonfaceKilz |
| 2020-11-03 | Rename glossary.py to markdown_routes.py...Evary page with markdown content will have routes added in markdown_routes.py * markdown_routes.py: New file. * wqflask/wqflask/glossary.py: Delete it. * wqflask/wqflask/__init__.py: Update import. | BonfaceKilz |
| 2020-11-03 | Remove encoding header for file...In python3 the default encoding is utf-8 so this is redundant. | BonfaceKilz |
| 2020-11-03 | Separate unittests from integration tests | BonfaceKilz |
| 2020-11-03 | Add test for "/glossary" route | BonfaceKilz |
| 2020-11-03 | Add glossary template and use it | BonfaceKilz |
| 2020-11-03 | Add and register glossary blueprint | BonfaceKilz |
| 2020-11-03 | Apply PEP-8 to file...* wqflask/wqflask/__init__.py: Remove unused import and variables. Also add module docstring and pylint errors to ignore. (before_request): Use correct spacing. | BonfaceKilz |
| 2020-11-03 | Remove stale file...* jquery.qtip.css: Delete it. | BonfaceKilz |
| 2020-11-02 | Merge pull request #476 from zsloan/correlation_errors_fix...Correlation errors fix | zsloan |
| 2020-11-02 | Created function for encoding the column value as bytes when fetching from th......* wqflask/utility/redis_tools.py - Created function load_json_from_redis that encodes the key (column_value) when fetching a value from the JSON pulled from Redis | zsloan |
| 2020-11-02 | Changed correlation page logic to skip over traits that share fewer than 6 sa......* wqflask/wqflask/correlation/show_corr_results.py - Moved the num_overlap check so that it never attempts to calculate the correlation if it's too low + checked if trait_object is None in the main loop (since it would be returned as None if the user doesn't have permissions | zsloan |
| 2020-11-01 | Merge pull request #472 from Alexanderlacuna/test-branch...Adding more Test for show_trait module | BonfaceKilz |
| 2020-10-31 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Alexanderlacuna |
| 2020-10-31 | Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis | zsloan |
| 2020-10-31 | remove redundant classes | Alexanderlacuna |
| 2020-10-31 | use descriptive variable names | Alexanderlacuna |
| 2020-10-31 | Use more descriptive variable and class names | Alexanderlacuna |
| 2020-10-30 | Merge pull request #474 from zsloan/mapping_y_axis_fix...Mapping Y Axis Fix | zsloan |
| 2020-10-30 | Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis | zsloan |
| 2020-10-30 | add test for get_export_metadata | Alexanderlacuna |
| 2020-10-30 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Alexanderlacuna |
| 2020-10-29 | Merge pull request #473 from zsloan/reaper_bootstrap_fix...Reaper bootstrap fix | zsloan |
| 2020-10-29 | Fixed issue with single-chromosome mapping after the bootstrap fix and fixed ......* wqflask/wqflask/marker_regression/display_mapping_results.py - Cast self.qtlresults 'chr' as a string since the comparison between it and the chromosome names was faililng due to numeric chromosomes being int type + used a list comprehension that converts None to an empty string when creating a comma-joined string from the list of mapping output files | zsloan |
| 2020-10-29 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into reaper_boo... | zsloan |
| 2020-10-29 | add test for show_trait | Alexanderlacuna |
| 2020-10-29 | Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te... | Alexanderlacuna |
| 2020-10-29 | Merge pull request #469 from BonfaceKilz/bug/fix-cookies-verification...Bug/Fix cookie verification bug | BonfaceKilz |
| 2020-10-29 | resolve merge conflict | Alexanderlacuna |
| 2020-10-29 | format file | Alexanderlacuna |
| 2020-10-29 | remove print statement in for loop | Alexanderlacuna |
| 2020-10-29 | add test for show_trait/export_trait_data | Alexanderlacuna |
| 2020-10-29 | Merge pull request #471 from BonfaceKilz/bug/replace-map-on-strip-method...Bug/Replace map on strip with a list comprehension that calls strip() | BonfaceKilz |
| 2020-10-28 | Merge pull request #470 from zsloan/mapping_chr_view_fix...Fixed error when zooming into a chromosome when mapping | zsloan |
| 2020-10-28 | A non-string being used as a paramter in HT.Link caused an error after the Py......* wqflask/wqflask/marker_regression/display_mapping_results.py - cast theGO["snpCount"] as a string | zsloan |
| 2020-10-29 | Replace map on strip with a list comprehension that calls strip()...* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto. | BonfaceKilz |
| 2020-10-28 | Use latin-1 encoding when converting hmac secret to bytes...* wqflask/utility/hmac.py (hmac_creation): Use latin-1 when serializing the hmac secret. This ensures that the behaviour of *verify_cookie* remains the same as in the python2 tip. | BonfaceKilz |
| 2020-10-28 | Add new test for hmac_creation with latin-1 secret...* wqflask/tests/utility/test_hmac.py (test_hmac_creation_with_cookie): New test. For this test, use a secret that behaves differently when encoded to either utf-8 or latin-1. | BonfaceKilz |
| 2020-10-28 | Add tests for cookie verification | BonfaceKilz |
| 2020-10-28 | Merge pull request #468 from zsloan/export_fix...Fixed trait page export issue caused by Scroller | zsloan |
| 2020-10-28 | Fixed trait page export to work with Scroller + added metadata for non-Pheno......* wqflask/wqflask/show_trait/export_trait_data.py - Added metadata for non-Phenotype traits and column headers (which didn't previously exist) * wqflask/wqflask/static/new/javascript/show_trait.js - Changed export_sample_table_data to use DataTables API instead of just selecting from the DOM with JQuery | zsloan |
| 2020-10-27 | Merge pull request #467 from zsloan/gsearch_encoding_fix...Remaining gsearch encoding fix for ProbeSet description | zsloan |
| 2020-10-27 | Cast ProbeSet description as binary to fix encoding issue on global search page...* wqflask/wqflask/gsearch.py - Cast ProbeSet description as binary | zsloan |
| 2020-10-27 | Merge pull request #466 from zsloan/show_trait_attributes_fix...Fix issue where attribute values were displayed in the wrong columns | zsloan |
| 2020-10-27 | Get the "first_attr_start_pos" from a samplelist instead of from each individ......* wqflask/base/webqtlCaseData.py - Removed code getting first_attr_start_pos * wqflask/wqflask/show_trait/SampleList.py - Added code getting first_attr_start_pos and assigning it to all samples + removing one unnecessary sort * wqflask/wqflask/static/new/javascript/initialize_show_trait_tables.js - Fixed issue that was causing the N column to not be displayed | zsloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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