| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-10-13 | Add some documentation for generating heatmaps | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user. | |||
| 2021-10-13 | Update the action button text | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers. | |||
| 2021-10-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | Frederick Muriuki Muriithi | |
| clustered_heatmaps | |||
| 2021-10-08 | Fixed some issues with scale and score_type in mapping export + include ↵ | zsloan | |
| mapping method in export filename | |||
| 2021-10-08 | Fix issue where outliers weren't being highlighted for rows drawn by ↵ | zsloan | |
| Scroller (so all rows beyond a certain point) | |||
| 2021-10-08 | Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵ | zsloan | |
| added some comments + changed EOL to LF because the file suddenly started including EOL characters | |||
| 2021-10-08 | Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵ | zsloan | |
| since I was only writing it to generate a specific file and it probably won't be re-used | |||
| 2021-10-06 | scripts: resource: Add option for specifying a groups uuid | BonfaceKilz | |
| 2021-10-06 | scripts: group: Replace args.group_name with data["field"] | BonfaceKilz | |
| 2021-10-06 | scripts: group: Update docstrings for "create_group_data" | BonfaceKilz | |
| 2021-10-06 | scripts: group: Break up long line | BonfaceKilz | |
| 2021-10-06 | scripts: group: Fix indentation | BonfaceKilz | |
| 2021-10-06 | workflows: main.yml: Disable link checking | BonfaceKilz | |
| 2021-10-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | Frederick Muriuki Muriithi | |
| clustered_heatmaps | |||
| 2021-10-06 | scripts: group: Remove empty `""` value for data.get | BonfaceKilz | |
| data.get("field") will default to None if there is no value; and None is falsy. | |||
| 2021-10-06 | scripts: group: Remove unused import | BonfaceKilz | |
| 2021-10-06 | scripts: group: Use a unique key to identify a group | BonfaceKilz | |
| 2021-10-06 | Enable selection of heatmap orientation | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced. | |||
| 2021-10-06 | doc: docker-container.org: Remove python2 gn2 docker set-up command | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing "name" attribute to tests | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing calls | BonfaceKilz | |
| After adding the missing attribute to "self.trait", we need to also need to update some missing calls. | |||
| 2021-10-06 | tests: test_run_mapping: Fix failing assert when getting perm strata | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing attribute to "self.trait" | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing positional argument "vals_hash" | BonfaceKilz | |
| 2021-10-04 | Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need ↵ | zsloan | |
| to be globally accessed anymore (I think I intiially moved it because I was calling it in create_group_data, but that ended up being unnecessary | |||
| 2021-10-04 | Changed the group.py script to replace user e-mails with IDs and to include ↵ | zsloan | |
| id, name, changed_timestamp, and created_timestamp in group details | |||
| 2021-10-04 | Changed get_user_groups to pull both the ID and details in the for loop from ↵ | zsloan | |
| group_list by using group_list.items() | |||
| 2021-10-04 | Add group link for user member groups | zsloan | |
| 2021-10-04 | scripts: group.py: Modify exit message when displaying updated data | BonfaceKilz | |
| 2021-10-04 | scripts: group.py: Remove "glom" dependency | BonfaceKilz | |
| 2021-10-04 | Decode redis response by default | BonfaceKilz | |
| 2021-10-04 | Modify resource editing script to enable data backups & restoration | BonfaceKilz | |
| 2021-10-04 | wqflask: resource_manager: Remove logger | BonfaceKilz | |
| 2021-10-04 | Add script that adds "editors" group to all resources in Redis | BonfaceKilz | |
| 2021-10-04 | Add script for creating/ updating groups during authorisation | BonfaceKilz | |
| 2021-10-04 | Remove "_scripts.html" and all it's references | BonfaceKilz | |
| 2021-10-04 | new_security: login_user.html: Delete commented out block | BonfaceKilz | |
| 2021-10-04 | Replace hard-coded e-mails with gn-proxy queries | BonfaceKilz | |
| * wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user. | |||
| 2021-10-04 | Rename "admin_login_required" to "edit_access_required" | BonfaceKilz | |
| 2021-09-27 | Apply pep-8 formatting | BonfaceKilz | |
| 2021-09-27 | Remove variable-- named after a python keyword-- called "list" | BonfaceKilz | |
| 2021-09-27 | Remove lengthy stack trace for 404, 400, 408 status codes | BonfaceKilz | |
| The stack trace causes the log file to grow into unmanageable sizes over time. | |||
| 2021-09-25 | Add progress indicator. Handle errors. | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add a progress indicator to show the user that there is some progress happening, so that they can wait. Add a function to handle any errors that arise. | |||
| 2021-09-25 | Remove hard-coded URL; use configured URL | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * etc/default_settings.py: remove duplicate configuration variable * wqflask/wqflask/collect.py: use the configured url for the API server Use the configured URL rather that the hard-coded URL that was used for testing out the clustered heatmap generation. | |||
| 2021-09-23 | Clear any existing image on subsequent clicks | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * If the user clicks on the "Clustered Heatmap" button, the system should remove any previously existing clustered heatmap image and replace it with the new image. | |||
| 2021-09-23 | Move the heatmap display area to before the table | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Move the heatmap area to before the data table, so that once the heatmap is generated, it shows up before the table, and the user is able to see what happened. | |||
| 2021-09-22 | Removed the Control for (marker) option from R/qtl for now since Danny ↵ | zsloan | |
| mentioned it isn't working correctly | |||
| 2021-09-22 | Fixed issue where the control marker parameter was being passed incorrectly ↵ | zsloan | |
| to GN3 (should be just 'control' but was previously passed as 'control_marker') | |||
| 2021-09-22 | Only show most search page options if results exist; otherwise provide a ↵ | zsloan | |
| link back to the home page | |||
| 2021-09-22 | Added type='button' to the Delete Collection button within collections/view, ↵ | zsloan | |
| since without it it attempts to submit the form encapsulating the button (export in this case) | |||
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