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2021-01-06Merge pull request #404 from Uditgulati/snp_browser_changesBonfaceKilz
WIP: Snp browser changes
2021-01-05Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-01-05Fixed issue where normalization method wasn't removed from stats figure axis ↵zsloan
titles when table values are reset
2021-01-05add server side class unit testsuditgulati
2021-01-05Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵uditgulati
snp_browser_changes
2021-01-04Merge pull request #538 from zsloan/feature/add_mapping_results_to_collectionzsloan
Added call to change_buttons to mapping results table (which deals wi…
2021-01-04Removed logging line from init_genome_browser.jszsloan
2021-01-04Only show Add button and run change_buttons function when genotypes are ↵zsloan
databased
2021-01-04Added call to change_buttons to mapping results table (which deals with ↵zsloan
highlighting rows and enabling the Add (to collection) button Also added a "check_node" paramter to change_buttons since sometimes the checkbox is in the second node instead of the first when it's preceded by blank text
2021-01-04Removed some logging from stats.jszsloan
2021-01-04Removed Scatterplot Matrix since it isn't working and wasn't really used to ↵zsloan
begin with
2021-01-04Increased the top margin on the trait page Bar Chart, which should prevent ↵zsloan
the chart options from overlapping with the title
2021-01-04Removed logging line from draw_probability_plot.jszsloan
2020-12-29Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-29Used a try/catch to deal with situations where there's no SE/var column, ↵zsloan
since apparently var_nodes wasn't undefined, causing the previous check to not work
2020-12-29update tests for run gemmaAlexanderkabui
2020-12-28Fix issue that caused error bars to not work for bar chartzsloan
2020-12-25Added edit_data_change to block_by_attribute_value so it will update stats ↵zsloan
figures after using that tool
2020-12-18Added redirect_uri to the ORCID_AUTH_URL since it wasn't working due to ↵zsloan
missing this parameter
2020-12-18This should fix the Github login errorzsloan
2020-12-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-18Added Additive Effect when using LOCO with GEMMAzsloan
2020-12-17Fixed some logic to work correctly with the changes to the way correlation ↵zsloan
filters work + changed correlation python code to include Mean (mean expression) for phenotype results
2020-12-17Added Mean (mean expression) column to phenotype correlation results tablezsloan
2020-12-17Fixed a couple logic issues and changed indentation in ↵zsloan
show_trait_calculate_correlations.html
2020-12-17Replaced Pheno with Publish for identifying dataset type in corr optionszsloan
2020-12-17Correlation Min Expr and Location filters display depending upon the ↵zsloan
selected target dataset now, instead of the trait's dataset
2020-12-17remove test for parse_gemma_output and modify run_gemma tests (#533)Alexander Kabui
2020-12-16Removed unused JS and fixed mapping covariate selection to work for both ↵zsloan
R/qtl and GEMMA
2020-12-16Made change to the way sample table width is calculated to account for ↵zsloan
sample name width
2020-12-16Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-12-16Removed ID/Sample/Value from Show/Hide Columns in trait page and only show ↵zsloan
the option if columns other than those exist
2020-12-16Set all attribute names to lower-case for sorting in order to keep order ↵zsloan
consistent
2020-12-16Replace zxcvbn async (#524)Alexander Kabui
* replace axcbn-async in templates * add zxcvbn-async.min.js in mechanical rob Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2020-12-16Replace shapiro wilk lib (#528)Alexander Kabui
* replace shapiro-wilk in templates * add shapiro-wilk.js to mechanical rob
2020-12-16Replace jquery libs(jquery cookie,jquery ui,jquery js) (#512)Alexander Kabui
* replace jquery-ui in templates * replace jquery-cookie library in templates * replace jquery.min.js in templates * add jquery-ui to mechanical rob * add jquery-cookie to mechanical rob * add jquery min js to mechanical rob Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2020-12-15Added additive effect to GEMMA results + removed an unused functionzsloan
2020-12-15Fixed typo in mapping results tablezsloan
2020-12-15Fixed mistake with the way lod score was being set for correlation resultszsloan
2020-12-15Resolved conflict from putting tool buttons in a separate templatezsloan
2020-12-15Fixed Reset button to also reset hidden rows + changed Hide No Value button ↵zsloan
to change its text when active
2020-12-15Changed the Hide No Value function to use DataTables APIzsloan
2020-12-15Changed string formatting to use preferable Python 3 syntax and converted ↵zsloan
LRS scores to LOD scores for the search results page
2020-12-15Changed LRS to LOD score for correlation page tablezsloan
2020-12-15Changed High P to Peak LOD and changed the width of the column somezsloan
2020-12-15Removed Index and Record from hideable columns in search result and ↵zsloan
correlation pages
2020-12-15Replace typeahead lib (#527)Alexander Kabui
* replace typeahead js in templates * add typeahead.bundle.js to mechanical rob * remove duplicate libs in snp_browser.html Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2020-12-15Replace twitter-post-fetcher (#526)Alexander Kabui
* replace twitter fetcher in templates * add twitter post fetcher to mechanical rob Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>
2020-12-15Merge pull request #525 from Alexanderlacuna/replace-underscoreBonfaceKilz
Replace (underscore string,underscore js)
2020-12-15Merge branch 'testing' into replace-underscoreBonfaceKilz
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