| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-05-07 | Merge branch 'master' of https://github.com/zsloan/genenetwork2 | Pjotr Prins | |
| 2015-05-06 | Merge pull request #18 from lomereiter/login_form_validation | zsloan | |
| email and pass validation | |||
| 2015-05-06 | email and pass validation | Artem Tarasov | |
| 2015-05-01 | Commented out imports of a few files that aren't used yet or stored in git | zsloan | |
| 2015-05-01 | Added Pjotr's latest pylmm changes | zsloan | |
| Added GEMMA and necessary plink-format genotype files in gemma directory Added the GEMMA genotype files to git LFS Removed some unnecessary/duplicated code from interval_mapping.py Separated GEMMA mapping code into its own file (will also do this for other methods) and fixed and issue that caused it to not run Added the table to the pair scan results page and wrote some code adding its attributes to each marker object, but it still isn't working yet | |||
| 2015-04-19 | Pick up PYLMM_PATH from environment or setting.py | Pjotr Prins | |
| 2015-04-19 | Pick up PYLMM_PATH from environment or setting.py | Pjotr Prins | |
| 2015-04-19 | pylmm: Release | Pjotr Prins | |
| 2015-04-19 | pylmm: can now be called from GN2 without path set | Pjotr Prins | |
| 2015-04-19 | pylmm: auto add to pythonpath | Pjotr Prins | |
| 2015-04-19 | pylmm: move temp_data local | Pjotr Prins | |
| 2015-04-19 | pylmm: module loading | Pjotr Prins | |
| 2015-04-19 | pylmm: Copied benchmark (preparing for a module) | Pjotr Prins | |
| 2015-04-19 | Output configi | Pjotr Prins | |
| 2015-04-19 | runserver: set port | Pjotr Prins | |
| 2015-04-19 | INSTALL: refer to information in ./misc | Pjotr Prins | |
| 2015-04-19 | Restore logger in runserver | Pjotr Prins | |
| 2015-04-19 | pylmm: Edit conflict | Pjotr Prins | |
| 2015-04-19 | INSTALL info | Pjotr Prins | |
| 2015-04-18 | Show first 40 LOD scores | Pjotr Prins | |
| 2015-04-18 | Disable some print statements - will introduce debug levels soon | Pjotr Prins | |
| 2015-04-18 | Fix NA to float tranforms | Pjotr Prins | |
| 2015-04-18 | pylmm: fix integration problems | Pjotr Prins | |
| 2015-04-18 | pylmm: fix integration problems | Pjotr Prins | |
| 2015-04-18 | Use reduced outputter for GN2 logs too | Pjotr Prins | |
| 2015-04-17 | Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmm | Pjotr Prins | |
| 2015-04-17 | spacing | Pjotr Prins | |
| 2015-04-17 | INSTALL | Pjotr Prins | |
| 2015-04-17 | Merge branch 'master' into lmm | Pjotr Prins | |
| 2015-04-13 | Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmm | Pjotr Prins | |
| 2015-04-13 | Started on INSTALL information | Pjotr Prins | |
| 2015-04-13 | Added examples for convertlmm.py | Pjotr Prins | |
| 2015-04-13 | Improved assertion message | Pjotr Prins | |
| 2015-04-10 | Added git large file system (the .gitattributes files) and fixed an issue ↵ | zsloan | |
| where rat trait pages wouldn't work | |||
| 2015-04-06 | Added secure_server.py to gitignore and fixed conflicts for merging Lei's ↵ | zsloan | |
| new code | |||
| 2015-04-06 | Just committing a couple minor bug fixes to get code working after pulling ↵ | zsloan | |
| Pjotr's latest changes | |||
| 2015-04-06 | Merge branch 'master' of github.com:zsloan/genenetwork2 | zsloan | |
| 2015-04-06 | Removed the old news code before pulling over Lei's changes | zsloan | |
| Removed the SharingPage import from views since it doesn't exist anymore | |||
| 2015-04-06 | Merge pull request #3 from pjotrp/master | zsloan | |
| 0.50-gn2-pre1 | |||
| 2015-04-06 | Removed dataSharing directory and its files since they aren't being used, | zsloan | |
| but I should note that a couple of them were changed from GN1; I think that there was some attempt to implement this very early into GN2's development, but we'd probably be better off starting from scratch since a number of things have changed since then (such as the way we call queries) Removed the Singapore link from the mirrors section of the index page since it wasn't working | |||
| 2015-04-04 | Regression tests | Pjotr Prins | |
| 2015-04-04 | Fixing transpose issues | Pjotr Prins | |
| 2015-04-04 | Run works without transposes | Pjotr Prins | |
| 2015-04-04 | Consolidate tests now they all agree for redis, redis_new and run | Pjotr Prins | |
| 2015-04-03 | - Calculate n,m from the start | Pjotr Prins | |
| - added test function to runlmm.py to run without Redis (25% faster) | |||
| 2015-04-03 | Rename gwas_using_redis to gwas_with_redis | Pjotr Prins | |
| 2015-04-03 | temp_data is no longer passed around | Pjotr Prins | |
| 2015-04-03 | Refactoring Redis use to one function | Pjotr Prins | |
| 2015-04-03 | Passing in an iterator | Pjotr Prins | |
| 2015-04-03 | Refactoring GN2 interface | Pjotr Prins | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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