| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-10-10 | Almost have correlation working for non-primary strain/group...There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work. | Lei Yan |
| 2013-10-09 | Improved some of the code related to the correlation page...For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter | Lei Yan |
| 2013-10-08 | Literature correlation works when it is selected as the sorted...correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense. | Lei Yan |
| 2013-10-08 | Did some work with interval mapping page; will use qtl reaper to do...the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl | Zachary Sloan |
| 2013-10-07 | Worked on logins, session_ids, flash messages, etc. | Sam |
| 2013-10-06 | Before writing login code | Sam |
| 2013-10-03 | Much more progess on logging in:...* Verifying emails now works * Redid user manager | Sam |
| 2013-10-02 | Half the verification code for email addresses is done | Sam |
| 2013-09-27 | Downloaded the TableTools library so tables can be exported/saved | Lei Yan |
| 2013-09-27 | Added trait links to correlation results...Began adding the code that does the initial sort by literature correlation | Lei Yan |
| 2013-09-27 | User registration beginning to work (at least the first stage) | Sam |
| 2013-09-27 | Before fixing an issue in pbkdf2 | Sam |
| 2013-09-24 | Did some work towards doing the tissue correlation for all traits...in a dataset (in order to sort by tissue correlation instead of sample correlation). | root |
| 2013-09-24 | before deleting more of the security flask stuff | Sam |
| 2013-09-24 | Just committing a few additions to the interval mapping code | Zachary Sloan |
| 2013-09-24 | Fixed the db_tools import in mrna_assay_tissue_data.py...Added file for the interval mapping page and wrote code that gets/sets some parameters | Zachary Sloan |
| 2013-09-20 | Tissue correlation results work for sample r/rho correlation page...and are written to the template | Lei Yan |
| 2013-09-13 | Merge /home/lei/gene | Zachary Sloan |
| 2013-09-13 | Added file that will convert genofiles to plink ped/map files | Zachary Sloan |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | Lei Yan |
| 2013-09-06 | Registration form validaiton without js works | Sam |
| 2013-09-05 | Missed some files in last checkin so adding them now | Sam |
| 2013-09-05 | Switched registration form to no longer be modal, but instead it's own page...Added validation of form using parsley.js Added password strength indicator using zxcvbn | Sam |
| 2013-09-05 | Adjusting to using our own registariton package | Sam |
| 2013-09-04 | Trying to trace through files | Sam |
| 2013-08-28 | Various changes to track down what happens with security modules | Sam |
| 2013-08-23 | Finally figured out where to put flask_security into the code...Various registration template changes | Sam |
| 2013-08-23 | Working on user registration and added nginx conf for my branch | Sam |
| 2013-08-22 | Added show_trait_js_test to the tests run by test_runner...Fixed the part of show_trait_js_test that checks that the style is "display: none;" | Zachary Sloan |
| 2013-08-22 | Fixed a couple minor things | Zachary Sloan |
| 2013-08-22 | Fixed import in show_trait_js_test.py...Added a function to browser_run.py that gets an element's style | Zachary Sloan |
| 2013-08-21 | Just changed a comment in the show trait js test | Zachary Sloan |
| 2013-08-21 | Fixed an issue where correlationFunction was being imported...instead of its updated name correlation_function | Zachary Sloan |
| 2013-08-21 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-21 | Just removed a couple print statements | Zachary Sloan |
| 2013-08-16 | Created a file (test_runner.py) that runs every test in the...directory in a row and reports the results | Zachary Sloan |
| 2013-08-16 | Merge https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-16 | Removed and imported the Test class from browser_test.py in each...test file | Zachary Sloan |
| 2013-08-15 | Removed the markers with no variance (and thus no p-values) from the...manhattan plot | Zachary Sloan |
| 2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-14 | Made some changes related to getting marker regression working for...some datasets | Zachary Sloan |
| 2013-08-14 | Removed some duplicate files in the maintenance folder | Zachary Sloan |
| 2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-14 | Committing browser test files | Zachary Sloan |
| 2013-08-13 | Added several test files and the file with the class that...they import (browser_test.py) | Zachary Sloan |
| 2013-08-08 | First Selenium test added | Sam Ockman |
| 2013-08-08 | Fixed issue where points in marker regression manhattan plot...weren't positioned on the x-axis | Zachary Sloan |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user password, etc | Zachary Sloan |
| 2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense...for them not to have genofiles yet) | Zachary Sloan |
| 2013-07-30 | Just added some print statements to debug an issue with LMM code...Also added some to notes | Zachary Sloan |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |