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2015-08-06Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-08-06Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-31Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-29Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-28Merge https://github.com/genenetwork/genenetwork2Lei Yan
2015-07-27Committing a few more changes to tables before pulling Lei's global search ↵zsloan
updates
2015-07-24Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-23Merge /home/zas1024/geneLei Yan
2015-07-23Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-23Committing most recent changes to tables so Lei can pull; still have a few ↵zsloan
more issues to resolve, like setting initial column width
2015-07-20Missed commenting out a line in collections/listzsloan
2015-07-20Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-07-20Fixed the code that generates the dataset selection drop-down for correlationszsloan
Made changes to the tables of correlation results, collections, and search results: - Added resizeable columns to correlation results and collections, but not to search results because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling to the search results) - Correlation results and collections are now in scrolling tables - The style is the same across all of these tables now Remaining issues: - It doesn't seem like I can set the column width when initializing dataTables in correlation results. I don't know why this is; it might be due to the table already being the size of a full page. I want to be able to default to some good widths, even if the user can resize them - I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is due to having to put the text in a div.
2015-07-17Merge pull request #97 from lyan6/masterzsloan
Committer: Lei Yan <lei@penguin.uthsc.edu>
2015-07-17Merge https://github.com/genenetwork/genenetwork2Lei Yan
2015-07-16Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-15Fixed issue where chromosome view doesn't work on qtlreaper mapping resultszsloan
2015-07-15Fixed some of the javascript after pulling Lei's changes to the search tablezsloan
2015-07-15Small mistake during last merge; forgot to change if to elif in templatezsloan
2015-07-15Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
Conflicts: wqflask/wqflask/templates/search_result_page.html
2015-07-15Cursor doesn't change when hovering over index column header nowzsloan
2015-07-15Merge pull request #94 from lyan6/masterzsloan
Committer: Lei Yan <lei@penguin.uthsc.edu>
2015-07-15Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-07-10Merge /home/lei/genezsloan
2015-07-10Fixed the genofile_parser.py script since some .geno files had been ↵zsloan
incorrectly converted to json Fixed GO search to work with combined searches
2015-07-10Merge https://github.com/genenetwork/genenetwork2Lei Yan
2015-07-10On branch masterLei Yan
2015-07-10On branch masterLei Yan
2015-07-10Added an OR ("Get Any") search to the index pagezsloan
Fixed several issues with existing searches; for example, the user can type "Chr" before the chromosome parameter (for example LRS=(9 999 Chr2 100 105) )
2015-07-09Added a temporary fix to prevent .geno requiring mapping methods from ↵zsloan
appearing for human groups
2015-07-09Forgot to add one change to the last commitzsloan
2015-07-09Mapping methods now check for existing genotype files.zsloan
Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory
2015-07-09Some phenotype searches were throwing an error due to an assert statement in ↵zsloan
trait.py. Since I couldn't find the purpose of the assert statement I removed it.
2015-07-07Updated mirror/development sites and changed font color in form control emementszsloan
2015-07-07Also added index column to collectionszsloan
2015-07-07Added index column and changed the way location is displayed for search resultszsloan
2015-07-06Forgot to add the search error page templatezsloan
2015-07-06An error page should be loaded if the user uses a nonexistent search term, ↵zsloan
instead of getting an Internal Server Error
2015-07-02Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-07-02Merge pull request #81 from lomereiter/fix_exportingzsloan
Fix SVG/PDF exporting
2015-07-02Combined searches that didn't work previously should work now, including cis ↵zsloan
and trans combined searches
2015-07-02fix typosArtem Tarasov
2015-07-02fix #80Artem Tarasov
2015-07-02use button for returning to full viewArtem Tarasov
2015-07-02added CairoSVG to misc/requirementsArtem Tarasov
2015-07-01Needed to add a couple parenthesis for transLRS searcheszsloan
2015-07-01Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-07-01cis and trans LRS searches now work. Still need to get them working in ↵zsloan
combined searches
2015-06-29Merge pull request #72 from lomereiter/issue69zsloan
Fixes #69
2015-06-29Merge pull request #77 from lomereiter/fix_sqlzsloan
SQL security fixes
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