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2015-10-22Fixes issue #126. Fixed broken references to dbdoc folder. They now allEthan Willis
point to static/dbdoc. Added static/dbdoc folder.
2015-10-22Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-10-22Added factor loadings table and plot (though need to finish improving plot ↵zsloan
still) Fixed issue where cM locations for R/qtl were displayed as Mb and had used Mb Chr lenghts for the scale
2015-10-20Merge pull request #124 from sn3twork/enhancement/ui/wgcna_setupzsloan
Updated wgcna_setup to use Bootstrap error messages and form styling.
2015-10-20Merge pull request #121 from sn3twork/masterzsloan
Fixes bug #98. Enhancement
2015-10-20Updated wgcna_setup to use Bootstrap error messages and form styling.Ethan Willis
2015-10-19Enhancement of fix for bug #98. Refuses submission of search form ifEthan Willis
search terms are empty. This avoids an internal server error.
2015-10-12Changed the location filter for correlation pagezsloan
2015-10-12Fixed an error page that occurs if traits with no overlapping samples are ↵zsloan
used for correlation matrix
2015-10-09Merge branch 'master' of github.com:zsloan/genenetwork2zsloan
2015-10-09Fixed correlations for phenotype datasetszsloan
Fixed table for some expression dataset searches Added collection button to correlation page Added color gradient to correlation matrix
2015-10-08Committer: Lei Yan <lei@penguin.uthsc.edu>Lei Yan
On branch master
2015-10-08Merge pull request #120 from DannyArends/WGCNAintegrationLei Yan
WGCNA integration
2015-10-08Using the correct NA from Rpy2DannyArends
2015-10-08Minor, adding a better check for NADannyArends
2015-10-08Adding more commentsDannyArends
2015-10-08Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵DannyArends
WGCNAintegration
2015-10-08User inputs are now passed to the algorithm, and power is tested, and ↵DannyArends
autoselected. We need to discuss which parameters we want to expose to the user.
2015-10-08Massive update to the templates, adding error checking and handling + the ↵DannyArends
eigen genes per module
2015-10-07Adding library for slider used with correlation toolzsloan
2015-10-07The results now show the soft thresholds table, and the gene <-> module tableDannyArends
2015-10-07Passing more information calculated by WGCNA to the results pageDannyArends
2015-10-07Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵DannyArends
WGCNAintegration
2015-10-05Correlation Matrix page is partially complete + fixed some issues with ↵zsloan
column resizing on global search pages
2015-09-27Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵DannyArends
WGCNAintegration
2015-09-25Forgot to add the table-striped class to the basic stats table to make its ↵zsloan
style the same as other tables
2015-09-25Made the basic statistics table look nicer and got rid of the foo column if ↵zsloan
only one sample group
2015-09-24Location range feature should work for correlations now, though the ↵zsloan
interface appearance needs to be improved
2015-09-20Using the webqtlConfig.TMPDIR constant and the webqtlUtil.genRandStr functionDannyArends
2015-09-20Now able to run WGCNA analysis on a user defined collection, still lots of todosDannyArends
2015-09-20Display the results from WGCNA updatedDannyArends
2015-09-20Transfering data from python to R for WGCNA analysis using Rpy2DannyArends
2015-09-20Updating the WGCNA setup and results templatesDannyArends
2015-09-19Adding a todo list to the code, for issue: genenetwork/genenetwork2#119DannyArends
2015-09-19Adding views and passing the trait_list information from setup to resultsDannyArends
2015-09-192 templates, 1 for user input and 1 for showing the resultsDannyArends
2015-09-19Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵DannyArends
WGCNAintegration
2015-09-18Filter by min expression and r range now works, though interface for slider ↵zsloan
could be improved
2015-09-17Merge branch 'master' of github.com:genenetwork/genenetwork2 into ↵DannyArends
WGCNAintegration Staying up2date
2015-09-11Merge branch 'master' of github.com:genenetwork/genenetwork2zsloan
2015-09-11Fixed issue causing error if trying to use Heatmap or Correlation Matrix ↵zsloan
with an empty collection Fixed tables in correlation page and trait page to separate index column and checkbox column
2015-09-11Removing import pandas from codeDannyArends
2015-09-11More fiddling with templatesDannyArends
2015-09-11Figured out how those flask templates work, analysis broken down into 3 ↵DannyArends
parts, WGCNA R package installs and loads succesfully in the gn2-docker image
2015-09-11Some more work on the analysisDannyArends
2015-09-11pandas is deprecated, so let's not use itDannyArends
2015-09-11Start R and load the WGCNA library in wgcna_analysis.pyDannyArends
2015-09-11Adding python package pandas to the requirementsDannyArends
2015-09-11Adding empty WGCNA class, and creating it in views.pyDannyArends
2015-09-11Seems I always turn around the G and CDannyArends
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