| Age | Commit message (Expand) | Author |
|---|
| 2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into M... | Lei Yan |
| 2016-09-27 | Remove reintroduced geno files | zsloan |
| 2016-09-27 | Conflict in wqflask/wqflask/templates/show_trait_mapping_tools.html | zsloan |
| 2016-09-26 | Test: added mechanize test for CIM (reaper) | Pjotr Prins |
| 2016-09-26 | Test: added pylmm test | Pjotr Prins |
| 2016-09-26 | Test: --all switch added | Pjotr Prins |
| 2016-09-26 | Doc: edits from Zwets | Pjotr Prins |
| 2016-09-26 | Mechanical Rob: make it possible to run single tests | Pjotr Prins |
| 2016-09-26 | Test: mechanical Rob executes scanone test | Pjotr Prins |
| 2016-09-26 | Settings: LOCAL_PRIVATE_FILES | Pjotr Prins |
| 2016-09-25 | Test: should be a Post with parameters filled in | Pjotr Prins |
| 2016-09-25 | Logger: use output for assessing mapping parameters | Pjotr Prins |
| 2016-09-25 | Test: input parameters for mapping | Pjotr Prins |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
| 2016-09-25 | Settings: enforce MAPPING_PATH only when running plink_gemma | Pjotr Prins |
| 2016-09-25 | Removed large genotype_files from repository. The current set was saved...in http://files.genenetwork.org/data_files/ and can be used when
unpacked in GENENETWORK_FILES (see ./etc/default_settings.py)
| Pjotr Prins |
| 2016-09-25 | Testing: looking for a way to run pylmm | Pjotr Prins |
| 2016-09-25 | I was getting below error with the small database. This commit, at least, does...not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
| Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-25 | Doc: Section on reproducibility... - fixed SVG URLs
| Pjotr Prins |
| 2016-09-13 | Save Image now works for Network Graph and downloads current graph as a png | zsloan |
| 2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ......Added "Reset" option to network graph that returns all the nodes/edges
Made the visualization options area in the network graph a little wider
| zsloan |
| 2016-09-13 | Merge pull request #181 from pjotrp/zsloan...Run scripts from ./wqflask - just like the webserver | zsloan |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
| 2016-09-12 | Merge pull request #180 from pjotrp/zsloan...Support maintenance scripts | zsloan |
| 2016-09-10 | Comment | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
| 2016-09-10 | Merge branch 'development' of github.com:genenetwork/genenetwork2 into zsloan | Pjotr Prins |
| 2016-09-10 | Doc: Rpy2 note | Pjotr Prins |
| 2016-09-09 | Added a couple options for network graph - Focus Trait, Layout, and a correla......Changed/added a couple node/edge attributes for network graph
Updated dataset menu structure json file to include the human RETINA data set
Added css file for network graph page (specifically to make the appearance of the options resemble the RETINA website's)
| zsloan |
| 2016-09-09 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins |
| 2016-09-09 | Doc: note on guix paths | Pjotr Prins |
| 2016-09-02 | Added Network Graph feature that uses cytoscape.js. Currently you can view GN......Fixed issue that caused error with correlation page
| zsloan |
| 2016-08-26 | Fixed appearance (border width mostly) of basic stats table on trait page...Removed unnecessary datatables javascript code that referred to basic stats table
| zsloan |
| 2016-08-24 | Fixed issue causing bootstrap results to not plot correctly. | zsloan |
| 2016-08-24 | Replaced post-publication description with pre-publication description for co......Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former
Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases)
Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale
Removed some unused javascript libary imports from search/global search pages
| zsloan |
| 2016-08-17 | Updated dataTables from 1.10.8 to 1.10.12 on search result page | zsloan |
| 2016-08-17 | Fixed problem where Year column didn't sort properly in phenotype search and ... | zsloan |
| 2016-08-16 | Users can now select specific traits from collection when using collection to......To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url
Duplicate traits can no longer by added to collections
Fixed the digits for a few table columns in collection (additive effect, etc).
| zsloan |
| 2016-08-15 | Removed text recommending winsoring when mapping since that feature isn't imp......Added padding to header text of Basic Statistics table
| zsloan |
| 2016-08-12 | Changed pop-up asking to import collections to less obtrusive checkbox...Decreased collections/list table width
| zsloan |
| 2016-08-11 | Added prompt when user logs in that lets them choose to import existing anony... | zsloan |
| 2016-08-08 | Fixed bug where Interval Analyst result wouldn't appear for chromosome X in m......Fixed broken image link in Interval Analyst table for rats
Small change to column width of gene global search
| zsloan |
| 2016-08-08 | Doc: gn_exec | Pjotr Prins |
| 2016-08-05 | Fixed issue that caused some interval mapping results to be wrong; the cause ......Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days
Updated genofiles
| zsloan |
| 2016-08-03 | Fixed issue with certain sample names (for example BXD48a, BXD72a, etc) that ......Disabled bootstrap for mapping unil issue causing wrong results is fixed
Added header to first column of basic statistics table and increased width to avoid rows spilling over to second line
| zsloan |
| 2016-07-29 | Fixed issue where you couldn't delete collections when logged in | zsloan |
| 2016-07-29 | Merge branch 'cookie_sessions' of github.com:zsloan/genenetwork2 into develop......Conflicts:
wqflask/base/data_set.py
| zsloan |
| 2016-07-29 | Fixed a couple issues where you couldn't remove or add traits to user collect... | zsloan |
| 2016-07-27 | Problem with phenotype traits should be fixed now | zsloan |
